Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1872 ATGAGTCGTAGAGTGAGGAGGAAAGTGGCAAGGAGAAGCGAAGGGAATGTGGTGTTAGGGGGTTGGCCTGAAATTCAAGACGAAGTTTTGGATTTAAAATGCCGAGGGATTGTTGATTGGACGAGCTTACCCGATGATACAGTGATTCAGTTGTTGTCATGTTTAAGTTATCGAGACCGAGCTAGTTTATCGTCCACTTGTAGGACATGGAGGTCTCTTGGCAGTTCACCATGTTTGTGGACTTCTCTGGATATTCTGTCCAACAGGTTTGATGTCAACATGGCATCTTCACTTTCTCCTAGGTGTGTGCATCTTCAGAAGCTTAGATTTCGTGGGGCTGAATCTGCCGATGCAATAATTCATCTCCGAGCTAGGAACTTGCGTGAGTTAAGTGGTGACTATTGCAGGAAGATTACTGATGCGACTCTTGCAGTTATTGGGGCACGACATGAGTTACTTGAGAGCCTTCAGCTTGGACCAGATTTCTGTGAGAGAATCACTAGTGATGCTATTAAAGCAGTAGCTCATTGCTGCCCTAGATTGAATAAAATAAGGCTCTCTGGTGTTCGGGACGTAAATGCTGATGCTATTAATGCCTTGGCTAAGCATTGTCCAAAATTGGCTGATATTGGGTTCATTGACTGTCTGAAAGTTGACGAGGTTGCATTAGGAAATGTATCATCGCTTCGTTTCCTTTCTGTTGCCGGGACTTCGGGCATGAAGTGGGGCGTGGTTTCCAATCTTTGGCATGAGCTGCCTAACCTGATTGGATTAGATGTTTCAAGAACTGATATTGGTCCATCTGTTGTTGCAAGGTTGTTAGCTTCATCGCAGAACTTGAGGATTTTGTGTGCTTTGAATTGTCCTATCCTTGAAGAAGATGCAAGCTTTTCTGCTAGTAAATATAAGAACAAGCTACTAATTTCCCTTTTTACTGATATTTTTAAAGGACTGGGTTCTTTATTTTTTGATGCTACATACAAAGGCAAAAACGTGTTTTTGGATTGGAGGAATTCAAATAAGAATGATAAGGAGCTTAATGAAATCATACCCTGGCTTGAGTGGATGCTATCCCATACACTTTTGCGATCGGCTGAGAGCCCTCAACAGGGTTTGAACAATTTCTGGGTTGAACAAGGTGCAGCACTCTTGCTTAGTCTAATGCAAAGTTCTCAAGAGGATGTTCAAGAGAGGGCAGCCACGGGTCTTGCAACTTTTGTCGTAATTGACGATGAAAATGCCAGAATTGATTGTGGTAGGGCTGAAGCAGTTATGCGCAATGGTGGCATACACCTCCTTCTTGGCTTAGCAAAATCTTGGAGGGAAGGGCTTCAGTCTGAGGCAGCCAAGGCCATTGCAAACTTGTCCGTCAATGCCAATGTGGCCAAAGCTGTTGCAGAAGAGGGTGGGATTGATATTCTCGCTGGTCTGGCCAGGTCAACAAACAAGTTGGTGGCTGAAGAAGCTGCCGGGGGATTGTGGAACCTCTCTGCTGGAGAGGAGCACAAGGGTGCAATTGCTGAAGCTGGTGGAATACAAGCTTTAGTGGATCTTATATTCAAGTGGTCCTCTAGTGGAGATGGAGTTTTGGAACGTGCTGCTGGTGCATTGGCTAATTTGGCAGCTGATGATAAGTGTAGTACAGAAGTTGCTGCGGCAGGAGGTGTACATGCTCTAGTGATGCTTGCTCGTAACTGCAAATTCGAGGGAGTGCAAGAGCAGGCTGCTCGTGCATTGGCTAATTTAGCTGCTCATGGAGATAGCAATAGTAACAATGCTGCCGTTGGACAAGAAGCCGGTGCACTTGAGGCACTTGTTCAACTGACACGTTCTACACATGAGGGTGTTAGTCAAGAAGCTGCTGGTGCGCTTTGGAATTTGTCATTTGACGATAGAAATCGAGAAGCCATTGCAGCAGCTGGTGGAGTTCAAGCCTTGGTTGCCCTTGCCCAATCATGTTCTAATGCATCCACTGGACTTCAAGAGAGGGCTGCTGGTGCACTTTGGGGATTGTCAGCTTCTGAAGCCAATAGCATCGCCATTGGACGAGAAGGAGGTGTTGCACCTCTGGTTTCATTGGCAAGGTCTGAAGTAGAGGATGTTCACGAAACCGCTGCTGGGGCACTATGGAATCTTGCTTTCAACCCGGGTAATGCTCTTCGAATAGTGGAAGAAGGAGGAGTTTCTGCACTTGTCTATCTCTGCTCTTCATCAGTATCAAAAATGGCCCGGTTCATGGCTGCATTGGCATTGGCTTACATGTTTGATGGGAGAATGGATGAATTTGCTACAGTAGGCACTTCATTAGAAAGTACTTCTAAGAGTGTGAGCTTGGATGGAGCTAGAAGAACTGCTTTGAAAAACATTGAAGCTTTTGTTCTCAAGTTTTCTGATACACAAGCATTTGCGGCTGCTGCTGCATCGTCAGCTCCCGCGGCATTAGCACAGGTTACCGAAGGTGCTCGTATTCAAGAAGCAGGACATCTGAGATGCAGTGGTGCTGAAATTGGAAGATTTGTTACTATGCTACGAAGTCCATCGTCTACACTCAAAGCTTGCGCGGCTTTTGCTCTTCTCCAGTTCACAATTCCCGGTGGACGACATGCTACGCACCATGCTAGCCTCATGCAGAATGCAGGAGCAGCAAGAGTTCTTCGTAGTGCAGCCGCAGCAGCAACCGCGCCACTCGAAGCGAAAATCTTCGCCAGAATTGTCCTTCGTAATCTTGAGCATCACCAGATAGAGTACAAAGTCTAG 2757 0.4614 MSRRVRRKVARRSEGNVVLGGWPEIQDEVLDLKCRGIVDWTSLPDDTVIQLLSCLSYRDRASLSSTCRTWRSLGSSPCLWTSLDILSNRFDVNMASSLSPRCVHLQKLRFRGAESADAIIHLRARNLRELSGDYCRKITDATLAVIGARHELLESLQLGPDFCERITSDAIKAVAHCCPRLNKIRLSGVRDVNADAINALAKHCPKLADIGFIDCLKVDEVALGNVSSLRFLSVAGTSGMKWGVVSNLWHELPNLIGLDVSRTDIGPSVVARLLASSQNLRILCALNCPILEEDASFSASKYKNKLLISLFTDIFKGLGSLFFDATYKGKNVFLDWRNSNKNDKELNEIIPWLEWMLSHTLLRSAESPQQGLNNFWVEQGAALLLSLMQSSQEDVQERAATGLATFVVIDDENARIDCGRAEAVMRNGGIHLLLGLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIDILAGLARSTNKLVAEEAAGGLWNLSAGEEHKGAIAEAGGIQALVDLIFKWSSSGDGVLERAAGALANLAADDKCSTEVAAAGGVHALVMLARNCKFEGVQEQAARALANLAAHGDSNSNNAAVGQEAGALEALVQLTRSTHEGVSQEAAGALWNLSFDDRNREAIAAAGGVQALVALAQSCSNASTGLQERAAGALWGLSASEANSIAIGREGGVAPLVSLARSEVEDVHETAAGALWNLAFNPGNALRIVEEGGVSALVYLCSSSVSKMARFMAALALAYMFDGRMDEFATVGTSLESTSKSVSLDGARRTALKNIEAFVLKFSDTQAFAAAAASSAPAALAQVTEGARIQEAGHLRCSGAEIGRFVTMLRSPSSTLKACAAFALLQFTIPGGRHATHHASLMQNAGAARVLRSAAAAATAPLEAKIFARIVLRNLEHHQIEYKV* 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1872 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 685 727 IPR000225 GO:0005515
Lan11g1872 918 ProSiteProfiles F-box domain profile. 37 83 IPR001810 GO:0005515
Lan11g1872 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 510 555 IPR000225 GO:0005515
Lan11g1872 918 SMART LRR_CC_2 204 229 IPR006553 -
Lan11g1872 918 SMART LRR_CC_2 150 177 IPR006553 -
Lan11g1872 918 SMART LRR_CC_2 178 203 IPR006553 -
Lan11g1872 918 SMART LRR_CC_2 124 149 IPR006553 -
Lan11g1872 918 PANTHER PROTEIN ARABIDILLO 1 1 913 IPR044583 -
Lan11g1872 918 SMART fbox_2 43 83 IPR001810 GO:0005515
Lan11g1872 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 469 511 IPR000225 GO:0005515
Lan11g1872 918 Gene3D Ribonuclease Inhibitor 35 310 IPR032675 -
Lan11g1872 918 PANTHER PROTEIN ARABIDILLO 1-LIKE 1 913 - -
Lan11g1872 918 Pfam Armadillo/beta-catenin-like repeat 500 542 IPR000225 GO:0005515
Lan11g1872 918 Pfam Armadillo/beta-catenin-like repeat 544 584 IPR000225 GO:0005515
Lan11g1872 918 Pfam Armadillo/beta-catenin-like repeat 463 498 IPR000225 GO:0005515
Lan11g1872 918 Pfam Armadillo/beta-catenin-like repeat 592 628 IPR000225 GO:0005515
Lan11g1872 918 Pfam Armadillo/beta-catenin-like repeat 676 713 IPR000225 GO:0005515
Lan11g1872 918 Pfam Armadillo/beta-catenin-like repeat 630 673 IPR000225 GO:0005515
Lan11g1872 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 554 585 IPR000225 GO:0005515
Lan11g1872 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 600 642 IPR000225 GO:0005515
Lan11g1872 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 641 686 IPR000225 GO:0005515
Lan11g1872 918 Gene3D - 590 680 IPR011989 -
Lan11g1872 918 Gene3D - 521 589 IPR011989 -
Lan11g1872 918 SMART arm_5 458 498 IPR000225 GO:0005515
Lan11g1872 918 SMART arm_5 589 629 IPR000225 GO:0005515
Lan11g1872 918 SMART arm_5 674 714 IPR000225 GO:0005515
Lan11g1872 918 SMART arm_5 499 542 IPR000225 GO:0005515
Lan11g1872 918 SMART arm_5 417 457 IPR000225 GO:0005515
Lan11g1872 918 SMART arm_5 630 673 IPR000225 GO:0005515
Lan11g1872 918 SMART arm_5 715 756 IPR000225 GO:0005515
Lan11g1872 918 SMART arm_5 543 584 IPR000225 GO:0005515
Lan11g1872 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 428 470 IPR000225 GO:0005515
Lan11g1872 918 Gene3D - 681 759 IPR011989 -
Lan11g1872 918 Gene3D - 382 520 IPR011989 -
Lan11g1872 918 Pfam F-box-like 40 84 IPR001810 GO:0005515
Lan11g1872 918 SUPERFAMILY ARM repeat 338 745 IPR016024 -
Lan11g1872 918 SUPERFAMILY RNI-like 44 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1872 Lan-Chr11 35371151 35382558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1872 571 758 U-box Gene Family AT2G23140 35.979 7.52e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1872 - - ccaj:109792060 1512.28