Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1855 ATGCCTCCAAGAGTGGTGAAGAGAGGTGCCGCAAGGAGAATGTTAATAGCAGCGAAGGAATCTTCCAACGCTACAATTCAGAATCAGAAGAAGAATCATGAAGCAGATGAGGAGTTTTTGAATCATGAACAAAGCCCTGTTGTTGAGGAAGAGAAGGATAAGAATTCTGTTGTTGCTGTTGAAGATAAAATCATTGATGTGAAAAACGATGTAGAGAAAGTTAACGAGTCCATAGATGAATATGAAAAAGATGAGCAATTAGATTTGGAGGATAATTATCCTGAGTATGAAAACGAGGAGGATGGTGGAGTCGATTATGATGAGAAGGGAATTGAGGAAGATGATGGTCAGGAGGTGGGATATGAAGTAGAGGAAGACCCTGAAGAGGATGTGGGTGAAGGAGAGAGTGATACGGGTGACGAAGAAGTTGAATATGTTTATGAAGAAGTTGAAGAAGATGATGATGATGGTGAGCATGATGAGCATGCAGGTGAGGAGCATGAGCCTGAAAAGACGGCTGATGCGGATGAAGTGGTACACCATGAACTTGTGACTGAGAGGAGGAAGCAGAGGGAATTTGAAGTATTCGTCGGGGGCTTAGATAAGGATGCTACTGAGGATGATCTAAGGAAGGTTTTCAGTGAAGTTGGGGTGGTTATTGAAGTCAGGCTGGTGATGAACCCTCACACTAAAAAGAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTTGAACAAGCTAAAAGAGCAATAGCAGATCTGAAAAATCCAGTGATTAATGGCAAACAATGTGGTGTTGCTCCATGTCAGGACAATGATACCCTCCATTTGGGTAATATATGCAAGAGATGGACAAAAGAAGCTTTAAAGGAGAAGTTGAAACATTATGGAGTTGAGAATGTTGATGAATTGACTTTAGTAGAAGATAGTAACAATGAGGGAATGAACCGCGGATTTGCATTTTTGGACTTTTCATCTCATTCAGATGCTAAGGTAGCCTATAAGCGACTGCAGAAGAGAGATGTTATGTTTGGAGTTGATAAGCCTGCAAAGGTTTCCTTTGCAGACTCCTTTACTGAGCTGGGTGATGGAATTGTGAGAGAGGCTAAAACTGTGTTTATTGATCCACTGCCTCCTTCATGGGATGAAGAATATGTCCGCAATCATCTTAAGAAATATGGGGAGATTGAAAAGATTGAGCTTGCAAGGAACATGCCAGCTTCCCGCAGGAAGAACTATGGATATGTGACGTTTGGTACACATGCTGCTGCTGTGGAATGTGTTGATAGCATTGCCAGTGAAGGGTTAGGTGAAGGTGACAAGGTGAAAGTTAGGGCCAAATTGTCAAGACCACTTCGGAGACGCCGTGGAAAACATGTCAGTCATGGGCCCCACACTTCTGGTCGCAAACCTAAAAAAACGGCAAGGCCTTCATGGAGTCAACCTGCACCAATTAGTCGACCTGCACCACGTAGTCGACCACCACGTACCAAACCTGCTCGTGTGGTAAGAGGAATTGGAAGCCGTGTTTCGCCAGTTAGACCAGTTAGAGTGAGAGACAGACACCCGGTTATGTCCATGCCAGTTAGAGCTAGGCCAGTGGCTCCTCCAACTAGATCCTACAATAGGAGACCAGCTGCTCCTGCATATCCAAAACATAGCACGGAGGTAGATTATGGTCGACGTGAGGATCTGCCACCTCCAAGTAGAGCTTCTATGGATTACAACTATCGGGTGTCCTCCCAAAGACAGCCATCTTATAGGGATTATCCACCCCGCAGCCCTGGTTACTATGAGCTCCCTAGAAGCACATCTCATGCTGCACCAAGGAGAGGGTATGTGGATGACAGCTATGGACAAAGGTTTGAGAGGCCTTCTCCTCCTCCTCCCTCCCATCTAAGTTATCGTGAAGGGCACCACCATGATCATGACACATTACCTGAGTTGAAACGTCCTTACAGTGCCGTAGGTGATGTTCCTCCACGGTATGTGGATACTGGTGTTCGCCACTCAAGAGCACGTTTGGACTATGACTATGCAGGTAGTGCTCCACAGTATGGCGATGCTTATGGGGACAGATTCGGAAGGTCTAGTCGGGGATATAATGGTAGCAGAGGTTCTATTTCTTCACAAGACACACATGGGATGTATAGCAGTCGGCAGGGCGTGAATAATGGTGAAGGTTCTTTTGGTACTACGCACTCGTCAGGTTATGGCAATGATGATTATATGTCTCGCGAAAGTGATGTTGGTGGCAGTTCCTATTCATCGATTTATTCCCGTCGGGATCTGGGTGGTAGCAGCAGTTACATGAGTGGTGGTGGATCTCGGTCTTATTATTGA 2343 0.4528 MPPRVVKRGAARRMLIAAKESSNATIQNQKKNHEADEEFLNHEQSPVVEEEKDKNSVVAVEDKIIDVKNDVEKVNESIDEYEKDEQLDLEDNYPEYENEEDGGVDYDEKGIEEDDGQEVGYEVEEDPEEDVGEGESDTGDEEVEYVYEEVEEDDDDGEHDEHAGEEHEPEKTADADEVVHHELVTERRKQREFEVFVGGLDKDATEDDLRKVFSEVGVVIEVRLVMNPHTKKNKGFAFLRFETVEQAKRAIADLKNPVINGKQCGVAPCQDNDTLHLGNICKRWTKEALKEKLKHYGVENVDELTLVEDSNNEGMNRGFAFLDFSSHSDAKVAYKRLQKRDVMFGVDKPAKVSFADSFTELGDGIVREAKTVFIDPLPPSWDEEYVRNHLKKYGEIEKIELARNMPASRRKNYGYVTFGTHAAAVECVDSIASEGLGEGDKVKVRAKLSRPLRRRRGKHVSHGPHTSGRKPKKTARPSWSQPAPISRPAPRSRPPRTKPARVVRGIGSRVSPVRPVRVRDRHPVMSMPVRARPVAPPTRSYNRRPAAPAYPKHSTEVDYGRREDLPPPSRASMDYNYRVSSQRQPSYRDYPPRSPGYYELPRSTSHAAPRRGYVDDSYGQRFERPSPPPPSHLSYREGHHHDHDTLPELKRPYSAVGDVPPRYVDTGVRHSRARLDYDYAGSAPQYGDAYGDRFGRSSRGYNGSRGSISSQDTHGMYSSRQGVNNGEGSFGTTHSSGYGNDDYMSRESDVGGSSYSSIYSRRDLGGSSSYMSGGGSRSYY* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1855 780 SUPERFAMILY RNA-binding domain, RBD 194 340 IPR035979 GO:0003676
Lan11g1855 780 MobiDBLite consensus disorder prediction 162 177 - -
Lan11g1855 780 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 263 IPR000504 GO:0003723
Lan11g1855 780 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 372 430 IPR000504 GO:0003723
Lan11g1855 780 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 277 342 IPR000504 GO:0003723
Lan11g1855 780 Coils Coil 64 84 - -
Lan11g1855 780 MobiDBLite consensus disorder prediction 697 780 - -
Lan11g1855 780 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 370 449 IPR000504 GO:0003723
Lan11g1855 780 Gene3D - 128 267 IPR012677 -
Lan11g1855 780 MobiDBLite consensus disorder prediction 574 588 - -
Lan11g1855 780 CDD RRM_SF 372 445 - -
Lan11g1855 780 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 273 357 IPR000504 GO:0003723
Lan11g1855 780 MobiDBLite consensus disorder prediction 447 472 - -
Lan11g1855 780 MobiDBLite consensus disorder prediction 19 55 - -
Lan11g1855 780 MobiDBLite consensus disorder prediction 81 161 - -
Lan11g1855 780 PANTHER RNA RECOGNITION MOTIF 1 780 - -
Lan11g1855 780 MobiDBLite consensus disorder prediction 442 660 - -
Lan11g1855 780 Coils Coil 16 43 - -
Lan11g1855 780 Gene3D - 362 478 IPR012677 -
Lan11g1855 780 SMART rrm1_1 371 445 IPR000504 GO:0003723
Lan11g1855 780 SMART rrm1_1 194 267 IPR000504 GO:0003723
Lan11g1855 780 SMART rrm1_1 274 353 IPR000504 GO:0003723
Lan11g1855 780 MobiDBLite consensus disorder prediction 634 649 - -
Lan11g1855 780 MobiDBLite consensus disorder prediction 700 780 - -
Lan11g1855 780 MobiDBLite consensus disorder prediction 30 55 - -
Lan11g1855 780 SUPERFAMILY RNA-binding domain, RBD 366 468 IPR035979 GO:0003676
Lan11g1855 780 MobiDBLite consensus disorder prediction 76 177 - -
Lan11g1855 780 Gene3D - 272 356 IPR012677 -
Lan11g1855 780 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 271 IPR000504 GO:0003723
Lan11g1855 780 CDD RRM_SF 275 353 - -
Lan11g1855 780 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 780 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1855 Lan-Chr11 35256931 35262191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1855 188 431 Eukaryotic Initiation Factors Gene Family AT1G49760 23.507 6.52e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1855 - - gmx:100779340 894.034