Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1840 ATGATGCATGCTATGTTCAATGAATGTGATGAGAATCACTTTATGCCAATCCACTTTTTCAAGATCATACTCACTCATAACCTCCATGAAGGGAAGTTGATGATTCCAACAACTTTTGTGGAGAAATATGGAGAAGGCTTATCAAAAAGTGCTTTTCTTAAGGCTCCAAATGGTGGAGAATGGAAAGTAGATTTGGTAAAAGGTGATGGTAAAATTTGGTTTCAGAATGGTTGGAAAGAATTTGCAGAATACCACTCTTTAGCTGAAGGGCATGTTGTGATTTTCAGATATGAAAAAATGACAAATTTTGAGGTATTCATCTTTGATATGAGTGCCTTAGAAATAGAGTACCCCTTCAAAAGGGTAGAAGGTAAAAGGGTCTCTAAGGATGAAGGAAATAAACCTCAAATGGTTGAAAGTTTGAACAATTACAGAACAAATCAGAAGAGAAAAGATAACTCATCATTAGAATTTGTTCAACAATCTAAAAACAAAAGTAGATGTGTTGAATCTGTGAGTATCTTAAAGTTGTCAAAGGAAACTATGAATCATACTGGCAAAAAGTGTAATAAAGAAGGACAAAACACTACTGCTATGAAAATTACAGCTCTTGATAGAGCTAGATCTTTCAAATCTTGTAAACCATTCTGCTTGGTTTTCATGCAACCATCATACATTTTGTGTAAGGCTAATCTGAACTTACCATCCAAGTTTGGTATTGGATGCTTTAATTTAGGCATAAAGCGCGGCAATATCAATCTTAGGTCGGAAAATGGGAAAGTTTGGCCTGCAAGGTACCTAATCAGGGAACACAATATGGCACCAAAATTTGAACTCTCAAGTGGGTGGAAACCATTTGTTATGGACAACAACTTGAAAGTAGGTGATGTTTGCATATTTGAGTTCATTGATAGAACTAAGCTTACCTTACAGGTTTACATCTTTAGAAAGACTGAAAATTCAACATGTTCAACATCTGAAGGTTTCAAATTCAGTGTTAGCAGTCCAAAAGATGAATATGAAATGTGTGGATTTGACATAGCAAGTTCAAATTTTACAGAGAAACCAGTGATAGCTGCTAAGAACATTACAGCTTTGGATAGAGATAGTTCATTTGAAGTTTGCAACCCGTCGTTTCAGGTTGTAATGCAACCATCATTTGTCTGTTCTAATGCTCATTTGAGTTTACCGTCTGAGTTTTGCGAGAGATACTTTGATTTGAGAAATAAACGGGGACATATCAATCTTCGGATGTCGAATGGAAGAGTTCAGCGTGCAGTTTACCTCATCGCAAAACATGATGCAAGAACAACGTTTCATCTCTTAAGTGGGTGGGAGGCATTTGCCAAGGAAAATGACTTGATAGTTGGTGCTGTTTGCACCTTTGAGCTCATTGATAGAACTAAACTTACCTTCCAAGTTTACATCTCTAGAGAGACTAACAACTCAAATTGTCTAACTCCACAAGAATCTGCTGACGAGCCTCAAAATCATGAATCATTGATGCATGTTTATAGTAGAAAGGTAAAGGGGAGTGAGGTCAGATCGGTGAATGAGTTAGGAAATAGAGCGGGCGAGTCGGTTATACGATACTCTAACCTAATGGACACTATGCAGCAGGATACTGAGGAAGAACTTGCTGGAATCATGTAA 1653 0.3702 MMHAMFNECDENHFMPIHFFKIILTHNLHEGKLMIPTTFVEKYGEGLSKSAFLKAPNGGEWKVDLVKGDGKIWFQNGWKEFAEYHSLAEGHVVIFRYEKMTNFEVFIFDMSALEIEYPFKRVEGKRVSKDEGNKPQMVESLNNYRTNQKRKDNSSLEFVQQSKNKSRCVESVSILKLSKETMNHTGKKCNKEGQNTTAMKITALDRARSFKSCKPFCLVFMQPSYILCKANLNLPSKFGIGCFNLGIKRGNINLRSENGKVWPARYLIREHNMAPKFELSSGWKPFVMDNNLKVGDVCIFEFIDRTKLTLQVYIFRKTENSTCSTSEGFKFSVSSPKDEYEMCGFDIASSNFTEKPVIAAKNITALDRDSSFEVCNPSFQVVMQPSFVCSNAHLSLPSEFCERYFDLRNKRGHINLRMSNGRVQRAVYLIAKHDARTTFHLLSGWEAFAKENDLIVGAVCTFELIDRTKLTFQVYISRETNNSNCLTPQESADEPQNHESLMHVYSRKVKGSEVRSVNELGNRAGESVIRYSNLMDTMQQDTEEELAGIM* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1840 550 Pfam B3 DNA binding domain 19 106 IPR003340 GO:0003677
Lan11g1840 550 Pfam B3 DNA binding domain 379 479 IPR003340 GO:0003677
Lan11g1840 550 Pfam B3 DNA binding domain 220 317 IPR003340 GO:0003677
Lan11g1840 550 SMART B3_2 379 480 IPR003340 GO:0003677
Lan11g1840 550 SMART B3_2 217 318 IPR003340 GO:0003677
Lan11g1840 550 SMART B3_2 19 111 IPR003340 GO:0003677
Lan11g1840 550 ProSiteProfiles B3 DNA-binding domain profile. 217 318 IPR003340 GO:0003677
Lan11g1840 550 SUPERFAMILY DNA-binding pseudobarrel domain 210 318 IPR015300 -
Lan11g1840 550 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 15 317 - -
Lan11g1840 550 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 354 479 - -
Lan11g1840 550 SUPERFAMILY DNA-binding pseudobarrel domain 18 118 IPR015300 -
Lan11g1840 550 SUPERFAMILY DNA-binding pseudobarrel domain 376 479 IPR015300 -
Lan11g1840 550 Gene3D - 13 112 IPR015300 -
Lan11g1840 550 CDD B3_DNA 18 109 IPR003340 GO:0003677
Lan11g1840 550 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Lan11g1840 550 CDD B3_DNA 215 316 IPR003340 GO:0003677
Lan11g1840 550 PANTHER B3 DOMAIN-CONTAINING 15 317 - -
Lan11g1840 550 PANTHER B3 DOMAIN-CONTAINING 354 479 - -
Lan11g1840 550 ProSiteProfiles B3 DNA-binding domain profile. 379 480 IPR003340 GO:0003677
Lan11g1840 550 Gene3D - 357 482 IPR015300 -
Lan11g1840 550 Gene3D - 195 320 IPR015300 -
Lan11g1840 550 CDD B3_DNA 377 478 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1840 Lan-Chr11 35109145 35112375 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1840 349 474 B3 DNA Binding Superfamily AT3G18990 31.746 3.12e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan11g1840 B3 5.8e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1840 - - lang:109359945 1125.15