Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1819 ATGGCTAAGCCTGGAATGTTGGATTCTGATCCAGTGGTGATGTTGAAGAAGACCCTAGAGTTGAAAAAGAAGGAGTTGAAGAAGTTGGTAAGGTCCATTGTTGATGATGCTGATTTCAGCATTGAAACTATTGATCAAGCAAAGGAAGCACTTTGTGTTATAAAGGATTTGAAGCTGAGAAGAAATTCTTCTTGTTCTTCTTCTTCATCATCATCAATGTCTTTGAAGTTGCATAAGAATGTTACTTGCCCAGATGAATTCAAGTGTCCAATTTCCAAGGAATTGATGAGAGATCCTGTTATTGTGGCTTCTGGTCTGACATATGACAGATCTTTCATTCAGAAATGGCTGAGTGCCGGAAATAGGACTTGCCCTTCAACTCAACAAGTCCTCTCACACACTGTCCTCACTCCGAATCGCCTAATAAGGCAAATGATAGAACAATGGTCTAAAAAACAAGGGATTGAGTTGTCCAACAGTTTTAACTATTTAAACGAGGAAGGCATAACCGAAGCCGACCGTGACCAGTTTCTTTGTTTGCTTAAGAAAATGTCTTCGGCACTTCCTGATCAGAAAGCAGCCGCAAAAGAACTCCGCTTGTTGACGAAGAAGCATCCTTGCTTTCGAGTACTTTTTTGTGATTCTGTAGATGCAATTCCCCAACTGCTTAAGCCGATTTGTGGCAGTGATTCTTTTAGTAGTATTCACCCTGATCTCCAGGAAGATGTCATCACAACACTCCTCAACATCTCAATTCATGACAACAACAAAAAGCTAGTAGCCGAAACTCCAATGGTAATTCCAATCCTTATGAAAGCACTGAGAACAGGAACAATTGAAACAAGAAGCAACGCTGCAGCTGCCCTTTTCACTTTGTCGGCTCTTGACTCAAACAAGGAGCTTATAGGGAAATCCGGTGCCTTAAAACCATTGATCGACCTTTTAGAAGAAGGGCATCCATCAGCAATGAAAGATGTTGCTTCCGCAATTTTTACCTTATGTGTCATCCAAGAGAACAAGGCAAGAGCAGTAAAGGATGGCATAGTGAGGGTGATACTGAGCAAGATGAAGGACCGAATTCACATCGACGAATTACTAGCTATCCTTGCACTACTTTCAAGTCACCATAGGGCTATCGAGGACATCGGAGAACTCGGAGCTGTTCCTAGCTTGCTAAGCATTATCCGAGAGAGTTCCTGCGAACGCAATAAGGAGAATTGCGTCGCAATCCTTCAAACTGTTTGCCTGTATGATAGGTCCAAGTTGAAGGATATAAAGGAAGAGGAGAAAAATCACAGAACAATCTCTGAGCTTGCACAAAATGGAACATCAAGGGCTAAGAGAAAAGCTAGTGGAATTCTTGAGAGACTTAACAGGGTTGTTAATATCACACACACTGCATAA 1404 0.4174 MAKPGMLDSDPVVMLKKTLELKKKELKKLVRSIVDDADFSIETIDQAKEALCVIKDLKLRRNSSCSSSSSSSMSLKLHKNVTCPDEFKCPISKELMRDPVIVASGLTYDRSFIQKWLSAGNRTCPSTQQVLSHTVLTPNRLIRQMIEQWSKKQGIELSNSFNYLNEEGITEADRDQFLCLLKKMSSALPDQKAAAKELRLLTKKHPCFRVLFCDSVDAIPQLLKPICGSDSFSSIHPDLQEDVITTLLNISIHDNNKKLVAETPMVIPILMKALRTGTIETRSNAAAALFTLSALDSNKELIGKSGALKPLIDLLEEGHPSAMKDVASAIFTLCVIQENKARAVKDGIVRVILSKMKDRIHIDELLAILALLSSHHRAIEDIGELGAVPSLLSIIRESSCERNKENCVAILQTVCLYDRSKLKDIKEEEKNHRTISELAQNGTSRAKRKASGILERLNRVVNITHTA* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1819 467 SUPERFAMILY RING/U-box 82 157 - -
Lan11g1819 467 Pfam U-box domain 84 153 IPR003613 GO:0004842|GO:0016567
Lan11g1819 467 SMART arm_5 203 252 IPR000225 GO:0005515
Lan11g1819 467 SMART arm_5 295 335 IPR000225 GO:0005515
Lan11g1819 467 SMART arm_5 374 416 IPR000225 GO:0005515
Lan11g1819 467 SMART arm_5 253 294 IPR000225 GO:0005515
Lan11g1819 467 CDD RING-Ubox_PUB 87 129 IPR045210 -
Lan11g1819 467 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 5 465 - -
Lan11g1819 467 PANTHER U BOX DOMAIN-CONTAINING 5 465 - -
Lan11g1819 467 ProSiteProfiles U-box domain profile. 82 156 IPR003613 GO:0004842|GO:0016567
Lan11g1819 467 SUPERFAMILY ARM repeat 186 457 IPR016024 -
Lan11g1819 467 Gene3D - 157 461 IPR011989 -
Lan11g1819 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 156 IPR013083 -
Lan11g1819 467 SMART Ubox_2 86 149 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1819 Lan-Chr11 34842144 34845292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1819 145 467 U-box Gene Family AT3G07360 60.000 7.35e-130 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1819 - - lang:109360713 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1819 11 34842144 34845292 Lan13g1052 13 15654968 15658392 LSH