Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1817 ATGGAAAATCAATTCTTTCTCAATTCTCAAATGTGGCAATCATCATTATCATCATCTGCTATGGATTTTAACAACAAAACATTGGATAAGTCAAATGATCATAGCCTTCAATTTGATTCAGCACTTAGTTCAATGGTTTCTTCCCCTGCAGCTTCAAATTCCAACATTTCAAATGATAATTTTATCATCAGAGAACTCATTGGAAAATTAGGAAACATTAATAACAACAACAACAATAGTACTAACAACACTTCATGTTATAACACCCCTTTGAGTTCTCCTCCTAAAGTCAACAACAACAACAACAACAACATAAACAACAACAACAACAGTTACTTGGTGAAACCAATGATGTCATTGAATTCTTCAACTGTTGGTGAGTTTTCATCTGATTCTGGCTTTGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGAAGTAGGAGTTTCAATGGTAGAAGAACCCAATTGGGGTTGAAAAACAATGATGAATTGGCTCAAAGATCTAACACTTTTATGGAAAATGGTAAGTACACTAGAGTCTCAAGTAGTCCATCACTTCAAGTTCTTGGAGTTGGATCTCAAATGGGTATTCAAGAGAACAAGAATTCTCCTATGGAAGTTGCCAATTCTCAAGAAGAATCTACAATTTCTGAACAAATTCCAAATTTTGACAATGGGGTCAAGCCTTCTTCTTATATGAATTCCAGGAAAAGAAAAGGTTCTTCTTCCAAAGGAAAAACAAAAGAAACTTCAACCTCTGCCAATCCTGTCATTGGTGGTGAAGACTCAAATGCAAAACGTTACAAGAAAAATGAAGGTGATGGAAATGAAAATGGAGCTTTGAAGGAAGAGGAAGAATCCAAAGGGGATGCTAGTAATGGAGGTGATGAGAAACAGAAAAAGGGTAACTCAAAATCTTCTGAACCACCAAAGGATTATATTCATGTTAGAGCAAGAAGAGGTCAAGCTACTGATAGCCATAGTCTTGCAGAAAGAGTAAGGAGGGAGAAAATCAGTGAGAGGATGAAACTTCTCCAAGATCTTGTACCAGGTTGTAATAAGGTCACTGGAAAAGCACTTATGCTTGATGAAATTATAAACTATGTTCAGTCATTACAACGCCAAGTTGAGTTCCTTTCTATGAAATTGGCTACTGTTAACACTAGGCTGGATTTTAGTATTGAGAATCTAATCTCAAAAGATATATTTCAATCAAATAATTCTTTAGACCCAACATTCCCACTAAATTCCTCAGCAGAAGGCTTTTATGGAGCAATCCACAATAACATTCCTAATGAAACTGTTACACACAACTCAGTGGACCCATTAGATACTAGTTTGTGCCAAACCATTAGTACTATGCAATTACCTTCCCTTAGTGGATTTAATGAAAATGGCTTTCAGTATCCAATAGCATTCTCTGAAGATGACCTCCACACAATTGTTGAAATGGGATTTGGCCAAATTCCAAATAGGAAATCACCACAATCACAAAGTTTCAATGGCTCAAATCAAGTACACCTATGA 1527 0.3608 MENQFFLNSQMWQSSLSSSAMDFNNKTLDKSNDHSLQFDSALSSMVSSPAASNSNISNDNFIIRELIGKLGNINNNNNNSTNNTSCYNTPLSSPPKVNNNNNNNINNNNNSYLVKPMMSLNSSTVGEFSSDSGFAERAAKFSCFGSRSFNGRRTQLGLKNNDELAQRSNTFMENGKYTRVSSSPSLQVLGVGSQMGIQENKNSPMEVANSQEESTISEQIPNFDNGVKPSSYMNSRKRKGSSSKGKTKETSTSANPVIGGEDSNAKRYKKNEGDGNENGALKEEEESKGDASNGGDEKQKKGNSKSSEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLATVNTRLDFSIENLISKDIFQSNNSLDPTFPLNSSAEGFYGAIHNNIPNETVTHNSVDPLDTSLCQTISTMQLPSLSGFNENGFQYPIAFSEDDLHTIVEMGFGQIPNRKSPQSQSFNGSNQVHL* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1817 508 Gene3D - 319 394 IPR036638 GO:0046983
Lan11g1817 508 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 23 505 IPR024097 GO:0006355
Lan11g1817 508 SMART finulus 328 378 IPR011598 GO:0046983
Lan11g1817 508 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 320 391 IPR036638 GO:0046983
Lan11g1817 508 MobiDBLite consensus disorder prediction 263 312 - -
Lan11g1817 508 MobiDBLite consensus disorder prediction 196 312 - -
Lan11g1817 508 PANTHER BHLH TRANSCRIPTION FACTOR 23 505 - -
Lan11g1817 508 MobiDBLite consensus disorder prediction 196 238 - -
Lan11g1817 508 CDD bHLH_AtBPE_like 312 397 - -
Lan11g1817 508 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 322 372 IPR011598 GO:0046983
Lan11g1817 508 MobiDBLite consensus disorder prediction 489 508 - -
Lan11g1817 508 Pfam Helix-loop-helix DNA-binding domain 326 373 IPR011598 GO:0046983
Lan11g1817 508 Coils Coil 369 389 - -
Lan11g1817 508 MobiDBLite consensus disorder prediction 490 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1817 Lan-Chr11 34815592 34822442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1817 1 475 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 43.393 2.25e-99 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan11g1817 HLH 3.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1817 - - gmx:100812081 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1817 11 34815592 34822442 Lan13g1055 13 15716587 15720043 LSH
Lan11g1817 11 34815592 34822442 Lan12g0043 12 380948 383808 PCT
Lan12g0043 12 380948 383808 Lan11g1817 11 34815592 34822442 PCT