Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1814 ATGGCTGAAGATTTTGCTATTCCACCAATTGGTGACATCAACGACGATTTCGGTCTCCCCGATGATAACATTCTCAAAGTCGGTGAGGAAAAGGAGATCGGAACACTTGGTCTTAAGAAGAAGCTTCTTAAGGAAGGTCAAGGATGGGATAATCCTGAAGTTGGTGATGAAGTAGAAGTTCACTATACGGGGACGCTGCTTGATGGGACTAAGTTTGATTCGAGCCGCGACAGGAATAGCCCTTTTAAGTTCACTCTTGGGCAAGGGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAAAACGCTATCTTCACAATCCCGCCTGAGCTAGCCTATGGTGAATCTGGTTCCCCTCCAACGATTCCTCCAAATGCGACACTTCAATTTGATGTTGAGCTGCTGTCATGGACTAGTGTCAAGGACATATGTAAGGATGGTGGTATCTTTAAGAAGGTACTTACCGAGGGGGAGAAATGGGAGAATCCCAAGGATCCTGATGAAGTACTAGTAAAGTATGAAGCTCATCTGGAAGATGGAAAGCTTGTAGCAAAGTCTGATGGGGTGGAGTTCACTATTGGAGAGGGTCATTATTGTCCTGCATTGTCAAAGGCTGTTAAAACCATGAAGAGGGGGGAGAAAGTGATCTTGACAGTGAAACCCCAATATGGATTTGGTGAGAAGGGGAAGCCAGCGCAGGGTGATGAAGGTGCAGTTCCACCGAATGCAACATTGGAGATTACTCTTGAGTTAGTTTCTTGGAAGACGGTGTCAGAAGTGACTGATGACAAAAAGGTCCTGAAGAAGATCCTCAAGGAAGGGGAAGGATATGAGCGTCCTAATGAGGGTGCCATTGTGAAATTGAAATTGACTGGTAAGCTGCAAGATGGCACTGTCTTTTTGAGAAAGGGCCATGATGATGAAGAAAATCTGTTTGAATTCAAGACCGATGAGGAGCAAGTTATCGACGGGCTTGATAGAGCTGTAGTGACCATGAAAAAGGGTGAGGTTGCATTATTAACTATTGCGCCCGAGTATGCCTTTGGTTTGTCAGAGTCACAGCAGGAGTTAGCTGTGGTTCCTCCTAACTCAACTGTGTATTATGAGGTTGAGGTGGTCTCCTTTGAGAAGGAGAAGGAATCTTGGGATATGAACACTGAAGAGAAAATTGAAGCTGCTGGTAAGAAGAAAGAAGAAGGGAATGCGTTATTCAAAGCTGGAAAATATGCAAGAGCTTCCAAAAGATATGATAAGGCTGTAAAGTTCATCGACTATGATTCTTCCTTCAGCGAGGAGGAGAAAAAGCAGTCCAAGGCTTTGAAGGTTGCCTCCAATCTGAATAATGCTGCTAGCAAATTGAAGCTAAAAGAGTACAAAGAGGCGGAGAAATTGTGTACCAAGGTGTTGGACCTTGAGAGTACAAATGTGAAAGCCCTCTATAGAAGGGCCCAAGCATATATGCATTTGGCTGACTTGGATTTGGCTGAATTTGACATTAAGAAAGCTCTTGAGATTGATCCTAACAACAGGGATGTGAAAGTGGAGTATAAGACTTTGAAGGAAAAGCAAAAGGAGTACAATAAAAAGGAGGCAAAGTTTTATGGAAATATGTTCAACAAACTGACAAAAGCTTAG 1650 0.4321 MAEDFAIPPIGDINDDFGLPDDNILKVGEEKEIGTLGLKKKLLKEGQGWDNPEVGDEVEVHYTGTLLDGTKFDSSRDRNSPFKFTLGQGQVIKGWDEGIKTMKKGENAIFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKVLTEGEKWENPKDPDEVLVKYEAHLEDGKLVAKSDGVEFTIGEGHYCPALSKAVKTMKRGEKVILTVKPQYGFGEKGKPAQGDEGAVPPNATLEITLELVSWKTVSEVTDDKKVLKKILKEGEGYERPNEGAIVKLKLTGKLQDGTVFLRKGHDDEENLFEFKTDEEQVIDGLDRAVVTMKKGEVALLTIAPEYAFGLSESQQELAVVPPNSTVYYEVEVVSFEKEKESWDMNTEEKIEAAGKKKEEGNALFKAGKYARASKRYDKAVKFIDYDSSFSEEEKKQSKALKVASNLNNAASKLKLKEYKEAEKLCTKVLDLESTNVKALYRRAQAYMHLADLDLAEFDIKKALEIDPNNRDVKVEYKTLKEKQKEYNKKEAKFYGNMFNKLTKA* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1814 549 SMART tpr_5 481 514 IPR019734 GO:0005515
Lan11g1814 549 SMART tpr_5 398 431 IPR019734 GO:0005515
Lan11g1814 549 SMART tpr_5 447 480 IPR019734 GO:0005515
Lan11g1814 549 SUPERFAMILY FKBP-like 37 148 - -
Lan11g1814 549 SUPERFAMILY TPR-like 386 545 IPR011990 GO:0005515
Lan11g1814 549 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 269 380 - -
Lan11g1814 549 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 380 548 - -
Lan11g1814 549 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 267 - -
Lan11g1814 549 SUPERFAMILY FKBP-like 147 262 - -
Lan11g1814 549 SUPERFAMILY FKBP-like 265 398 - -
Lan11g1814 549 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 171 260 IPR001179 GO:0003755
Lan11g1814 549 ProSiteProfiles TPR repeat profile. 481 514 IPR019734 GO:0005515
Lan11g1814 549 Gene3D - 147 260 IPR046357 GO:0003755
Lan11g1814 549 Coils Coil 514 534 - -
Lan11g1814 549 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 51 140 IPR001179 GO:0003755
Lan11g1814 549 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 166 257 IPR001179 GO:0003755
Lan11g1814 549 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 282 377 IPR001179 GO:0003755
Lan11g1814 549 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 55 143 IPR001179 GO:0003755
Lan11g1814 549 Gene3D - 29 146 IPR046357 GO:0003755
Lan11g1814 549 Gene3D - 261 382 IPR046357 GO:0003755
Lan11g1814 549 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 288 381 IPR001179 GO:0003755
Lan11g1814 549 Gene3D Tetratricopeptide repeat domain 384 541 IPR011990 GO:0005515
Lan11g1814 549 Pfam Tetratricopeptide repeat 481 514 IPR001440 GO:0005515
Lan11g1814 549 PANTHER PEPTIDYLPROLYL ISOMERASE 269 380 - -
Lan11g1814 549 PANTHER PEPTIDYLPROLYL ISOMERASE 380 548 - -
Lan11g1814 549 PANTHER PEPTIDYLPROLYL ISOMERASE 1 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1814 Lan-Chr11 34794853 34799141 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1814 1 546 Calmodulin-binding Proteins AT3G25230 80.146 0.0 874
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1814 K09571 - gmx:100803189 909.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1814 11 34794853 34799141 Lan12g0041 12 359802 364408 PCT
Lan12g0041 12 359802 364408 Lan11g1814 11 34794853 34799141 PCT