Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan11g1799 | ATGTCTTCACTAAAAGTAAATGAAAAGCTGCTTAAGGAACTTGAATCAATGGGAATTCAACAGCCACATGCAATTCCAGCACTTTATTATTCTGGAAATACTAGCGTAGAGAAAGCTATAAGTTGGTTAATTCATCATGACACTGATTCTGATATTGATGAGATGCCATTGGTAGATGTAGATATTCCTATTGAGTCTACTGAATCATTCCCTACCACTGAAGAAATGAGAATCACAGCAGAAAAGTTAAGGAAACAAATGCGTAAGAGGAAAGAGGAAGAAGAAAAGAAAATCGAAAAGGAAAGGGAGAAGGAGAGGATTCAAGCAGGTAAGAAACTCATGGAGGCAAAGCGAATTGCCGAAGAAGCTGAAAGAAAAAGGTATTTGGCCTTGAAAAAAGCAGAAAAGGAAGAAGAGAAAAAAGCAAGGCAGAAAGTTCTCCAGAAATTGGAGCAGGATAAGTTAAATAGAAGGTCTATACACTCAATACCCTCAATACCCTCAGAAGTTCATGAACCTGTGAGATCTTCTGCTACTGCAGTAAGGGAAAACAAGTTGCAGAATTTAAAACCGGACTACACAACTGCGAAAGTTGATCACCTAAGAGAATGTTTGAGGTCCCTGAAGCGTAATCTCCAGGGAGAGAATGCCAGAGTCAGAAGGGCCTTTGAAACTCTTCTAATCTATATAGGAAATGTTGCCAAGAATCCTGATGATGAAAGATACAGGATGATCAGACTGAGCAACCCAGTATTCCAGGAGAGAATTGGGAGTTTAAAGGATGGTGTGGAGTTTCTTGAGCTTTGTGGATTTGAGAGAAGAGGTGACTTTTTGTATATTCCTCACAAAAAGATTGACACTACACTACTAAATTCAGCTGGATATGTATTAAATTCAGCATTGACAAATCCTTTTTTTGGAGCTTTAAGTACTTGTGATTAA | 942 | 0.3832 | MSSLKVNEKLLKELESMGIQQPHAIPALYYSGNTSVEKAISWLIHHDTDSDIDEMPLVDVDIPIESTESFPTTEEMRITAEKLRKQMRKRKEEEEKKIEKEREKERIQAGKKLMEAKRIAEEAERKRYLALKKAEKEEEKKARQKVLQKLEQDKLNRRSIHSIPSIPSEVHEPVRSSATAVRENKLQNLKPDYTTAKVDHLRECLRSLKRNLQGENARVRRAFETLLIYIGNVAKNPDDERYRMIRLSNPVFQERIGSLKDGVEFLELCGFERRGDFLYIPHKKIDTTLLNSAGYVLNSALTNPFFGALSTCD* | 314 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan11g1799 | 313 | SUPERFAMILY | UBA-like | 4 | 57 | IPR009060 | GO:0005515 | |
| Lan11g1799 | 313 | PANTHER | F13M7.16 PROTEIN | 1 | 311 | - | - | |
| Lan11g1799 | 313 | SMART | PGNneu | 221 | 282 | - | - | |
| Lan11g1799 | 313 | SUPERFAMILY | PUG domain-like | 202 | 306 | IPR036339 | - | |
| Lan11g1799 | 313 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 5 | 46 | IPR015940 | - | |
| Lan11g1799 | 313 | Coils | Coil | 73 | 153 | - | - | |
| Lan11g1799 | 313 | Pfam | PUB domain | 218 | 286 | IPR018997 | - | |
| Lan11g1799 | 313 | Gene3D | - | 202 | 298 | - | - | |
| Lan11g1799 | 313 | PANTHER | PUB DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 311 | - | - | |
| Lan11g1799 | 313 | Coils | Coil | 198 | 225 | - | - | |
| Lan11g1799 | 313 | Gene3D | - | 8 | 53 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan11g1799 | Lan-Chr11 | 34664370 | 34670824 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan11g1799 | 6 | 309 | C2H2 Transcription Factor Family | AT1G04850 | 50.980 | 1.12e-79 | 243 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan11g1799 | - | K24348 | gmx:100781260 | 357.836 |