Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan11g1795 | ATGTCTGTTCAACATGTCACCAAGTTAGCCATTTATAATCAAATGTCAAGTTTGCACAACAGTCGAGAAACGCTAGCTGGTTTGACCCTTAATGATATTTTAGCCAATCAGAAAAGATTATCTAACACATCACATATTGAAACGAAGAGTCGAACTCTCCTAGACATCATCAAAGAAGACGAGAGCAACAAAAAGGATCGAAGATCGTGGAAAGCTTTCAAGGACAAACTGAGAGTAAAGCGTGCAGGCTCTGCTTGGACATCATCAATTCACATTCCAACCTCAGATCCTCTTATTCAATTCCAACACATGTCAACTAACTACAATACTCACCAAGTTGATGATCTCAATTCTTCTCTGGCACCGGCAACCAAGCCTCAATTCTCTCGCCGGAGCTCCACCCGTTACGGATCTCCGGGAGATTCTTCCGGTGATGACTCTAGTGGTGCAGGAGCAGGAGCAGGAGCAGGAGGAGCACTCCGACCTATGTTGTCTCGACGAAACTCCACCAATGTGCCTTCCCAATCGGAACCCTACCGGCGAGGTAGAGTGGTAACTTTCCGAGATAGTTTTGAGGATGATGATTCCGACGATGAAATGAACAATGGCTCTGGAAGGGTAATGTCGGCGAGGGAGGCAGTGGCAGCGCAGGAGGCATCGGAGGCGGCGGCTGCAGAAGCGGAGATGGAAGAGGAGGAGGAGGAGGAGGAGCAGCCAATGACAATGTCACTGATGGATTTGTTGGAAGAAACTGATAGAGAAATGGGTCTTGAAGGATCAAGGTATATATTGAGTGATGATGATTTCGATGAAGATGAAGATGATGACGAAGATGAAGGTGATGATGATGATGATAATGGAGAAGATGCTATGGAATATACTTGTTGTATTTGCATGGTGAAGCATAAAGGTTCTGCTTTCATAACTTGTGGCCACACTTTTTGTAGAATGTGTTCAAGGGAGCTTAATGTTAGTAGAGGGAATTGTCCTCTATGCAACAATTTCATTTTGGAGATTCTTGATATTTTCTGA | 1032 | 0.4457 | MSVQHVTKLAIYNQMSSLHNSRETLAGLTLNDILANQKRLSNTSHIETKSRTLLDIIKEDESNKKDRRSWKAFKDKLRVKRAGSAWTSSIHIPTSDPLIQFQHMSTNYNTHQVDDLNSSLAPATKPQFSRRSSTRYGSPGDSSGDDSSGAGAGAGAGGALRPMLSRRNSTNVPSQSEPYRRGRVVTFRDSFEDDDSDDEMNNGSGRVMSAREAVAAQEASEAAAAEAEMEEEEEEEEQPMTMSLMDLLEETDREMGLEGSRYILSDDDFDEDEDDDEDEGDDDDDNGEDAMEYTCCICMVKHKGSAFITCGHTFCRMCSRELNVSRGNCPLCNNFILEILDIF* | 344 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan11g1795 | 343 | PANTHER | OS01G0917900 PROTEIN | 14 | 343 | - | - | |
| Lan11g1795 | 343 | MobiDBLite | consensus disorder prediction | 265 | 286 | - | - | |
| Lan11g1795 | 343 | ProSiteProfiles | Zinc finger RING-type profile. | 295 | 333 | IPR001841 | - | |
| Lan11g1795 | 343 | MobiDBLite | consensus disorder prediction | 117 | 240 | - | - | |
| Lan11g1795 | 343 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 269 | 343 | IPR013083 | - | |
| Lan11g1795 | 343 | MobiDBLite | consensus disorder prediction | 261 | 286 | - | - | |
| Lan11g1795 | 343 | SUPERFAMILY | RING/U-box | 294 | 339 | - | - | |
| Lan11g1795 | 343 | Coils | Coil | 213 | 237 | - | - | |
| Lan11g1795 | 343 | PANTHER | OS01G0917900 PROTEIN | 14 | 343 | - | - | |
| Lan11g1795 | 343 | MobiDBLite | consensus disorder prediction | 224 | 240 | - | - | |
| Lan11g1795 | 343 | MobiDBLite | consensus disorder prediction | 117 | 145 | - | - | |
| Lan11g1795 | 343 | Pfam | Zinc finger, C3HC4 type (RING finger) | 293 | 336 | - | - | |
| Lan11g1795 | 343 | SMART | ring_2 | 295 | 332 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan11g1795 | Lan-Chr11 | 34631852 | 34634045 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan11g1795 | 15 | 343 | C3H Transcription Factor Family | AT3G07120 | 35.734 | 1.08e-57 | 189 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan11g1795 | - | - | lang:109359938 | 548.51 |