Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan11g1786 | ATGGAGAAGAACTCATTACAAGATCTTAATTTTGTTGATAACAATGATCATGAAGAAATTCCTGAATGCTTTGTTTGCTGTGTTTGTTTGGATCTATTATACAAGCCGATTGTGCTAGCTTGTGGTCACATGTGCTGTTTCTGGTGTGTCCATAAATCAATGAGTTGTCTCCGTGAGTCTCAATGCCCATTTTGTCGGAATCAATACTATCACTTTCCAACAATCTGCCAAATGCTTCACTTTATGCTTCTTAAGATCTATCCTGTTGCTTACAAGGGAAGGGAGATTCAAACTCTTGAGGAAGAGAAGAAAACGGGCTTCTACTCCCCTCAATTTGATGCCGATACAGGTCGATCTCAAACTAAATTTGGTCATTCTGGTAGCCCATCTTCCTCCTCTAGTATAAATCTGGTATCCAACACTTGCAATGGCGGAACTTCCGAATGTATTGAGCGATTACAGTCCGCTGCCCAGGAAGGAGATGAAGGAACCATCGTTTTTGAACACTCTTCTTACGGAGCACCTATAGGTATTGGGACTCCTTCGGCCGAAGGAAAACTACTGTCTGAGAATGAGCTTCTTCCACAACAGAAAATATCAGTTGAAGATGTGATGTGTACTATGTGCAAGCAACTGCTCTTTCATCCCGTTGTTCTTAATTGCGGTCATGTATACTGTGAAACTTGTGTCGTCAACCTAGCTGATGAGGATCTTAGATGTCAAGTTTGTCAACTTCCACATCCGAAAGGACTTCCAAAAGTTTGTTTGGGGTTTGATCAGTTTTTGGAGGAAACGTTTCCTGAAGACTATGCACGGCGAAGAGTTGCTGTTCAACTTAGTAAAACCAAAGCCCAACCTGTGACCTCATCTAATTGTTCATCGGACAATGGTAACAAAGGAGAAAATATAGATTGGTGGTCTGATCCTGACTCAAAAGTTCATATTGGAGTTGGTTGTGATTTTTGCGGGATGTTTCCGATAATTGGTGATAGATATAAATGCAGCGACTGTAAGGAGAAGATGGGTTTTGATCTTTGTAGTGATTGCTATAACACCCGGTCCAAGCTTCCGGGCCGATTTAATCAACAACACACCTCAGAGCACAAGTTCAAGCTTGTACAACCCAATATTATCCGCAACATAATGTTGAGGCTGGTCACTGGACAGTCAGCAGACAATTCTATCGATAGCGAGACTTTCGAAAATCTACAGTTTACGTCGGAAGCTTTGTTTGACGAGGGAGAAGAGAACCAGAATGATTCTGAAGCCACCAGTTGA | 1278 | 0.4186 | MEKNSLQDLNFVDNNDHEEIPECFVCCVCLDLLYKPIVLACGHMCCFWCVHKSMSCLRESQCPFCRNQYYHFPTICQMLHFMLLKIYPVAYKGREIQTLEEEKKTGFYSPQFDADTGRSQTKFGHSGSPSSSSSINLVSNTCNGGTSECIERLQSAAQEGDEGTIVFEHSSYGAPIGIGTPSAEGKLLSENELLPQQKISVEDVMCTMCKQLLFHPVVLNCGHVYCETCVVNLADEDLRCQVCQLPHPKGLPKVCLGFDQFLEETFPEDYARRRVAVQLSKTKAQPVTSSNCSSDNGNKGENIDWWSDPDSKVHIGVGCDFCGMFPIIGDRYKCSDCKEKMGFDLCSDCYNTRSKLPGRFNQQHTSEHKFKLVQPNIIRNIMLRLVTGQSADNSIDSETFENLQFTSEALFDEGEENQNDSEATS* | 426 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan11g1786 | 425 | ProSiteProfiles | Zinc finger RING-type profile. | 26 | 66 | IPR001841 | - | |
| Lan11g1786 | 425 | CDD | RING-HC | 26 | 65 | - | - | |
| Lan11g1786 | 425 | PANTHER | UNCHARACTERIZED | 13 | 420 | - | - | |
| Lan11g1786 | 425 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 115 | IPR013083 | - | |
| Lan11g1786 | 425 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 186 | 299 | IPR013083 | - | |
| Lan11g1786 | 425 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE | 13 | 420 | - | - | |
| Lan11g1786 | 425 | SUPERFAMILY | RING/U-box | 16 | 72 | - | - | |
| Lan11g1786 | 425 | Gene3D | - | 307 | 373 | IPR043145 | - | |
| Lan11g1786 | 425 | ProSitePatterns | Zinc finger RING-type signature. | 221 | 230 | IPR017907 | - | |
| Lan11g1786 | 425 | SUPERFAMILY | RING/U-box | 200 | 247 | - | - | |
| Lan11g1786 | 425 | ProSiteProfiles | Zinc finger ZZ-type profile. | 314 | 378 | IPR000433 | GO:0008270 | |
| Lan11g1786 | 425 | SMART | zz_5 | 313 | 362 | IPR000433 | GO:0008270 | |
| Lan11g1786 | 425 | Pfam | Zinc finger, ZZ type | 315 | 354 | IPR000433 | GO:0008270 | |
| Lan11g1786 | 425 | ProSiteProfiles | Zinc finger RING-type profile. | 206 | 244 | IPR001841 | - | |
| Lan11g1786 | 425 | SUPERFAMILY | RING/U-box | 308 | 373 | - | - | |
| Lan11g1786 | 425 | MobiDBLite | consensus disorder prediction | 112 | 135 | - | - | |
| Lan11g1786 | 425 | MobiDBLite | consensus disorder prediction | 109 | 135 | - | - | |
| Lan11g1786 | 425 | SMART | ring_2 | 26 | 65 | IPR001841 | - | |
| Lan11g1786 | 425 | SMART | ring_2 | 206 | 243 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan11g1786 | Lan-Chr11 | 34530656 | 34535367 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan11g1786 | 1 | 156 | C3H Transcription Factor Family | AT3G58030 | 21.951 | 4.10e-07 | 50.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan11g1786 | - | - | gmx:100787174 | 637.106 |