Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1772 ATGAAGCTTCACTATCTACAATGCTTCACTTTCATCATTCTCGTTATGCCGCTACTTTTAACTGCAGCGAACTCAATCAACTACAACCACAATCAAAATCAGAAAGAGAAAGAAACAAGGGGTGATATCGTAGGAGAAGCGAAGTTGGAGAATTCATCAATGGCGGAAACGGAAAGGTCAGGTTACACTTTGAATCAGAATGCAGTTCCAGATGAGATAGCTTCTATGGTTGACATGACCATCCACAACTACACAAAGAGAAGGAATCTGAGTTTCTTCTCATGCGGGACAGGGAATCCCATTGATGACTGCTGGCGCTGTGACAAGCTTTGGTACCGCCACCGAAAGCGCTTAGCCAATTGCGCCATCGGTTTTGGACACAATGCCATTGGTGGTCGTGACGGAAGGTACTACGTTGTCACTGACCCAAGTGACAAAGATGTTATCAACCCCAAACAAGGAACCCTACGCCACGCTGTCATTCAAGACAGGCCCTTATGGATAGTGTTCAAGAGGGACATGGTGATCACATTAAAGCAAGAACTCATCATGAACAGTTTCAAGACCATTGATGCTCGTGGCTTCAACGTTCACATTGCTCATGGAGCTTGCATTACTATCCAATACATCACCAATGTCATCATTCATGGGCTCAATATTCATGATTGCATTCAAACTGGGAATGCTATGGTTCGTAGTTCACCTTCTCATTTTGGATGGAGGACCATGGCTGATGGAGATGGGATTTCCATCTTTGGTGCAAGTCACATTTGGATTGATCATAACTCTCTCTCTAATTGTGCTGATGGACTTATTGATGCTATTATTGGCTCGACTGCTATCACCATTTCAAATAATTATTTCACTAACCACAATGAGGTTATGCTATTGGGTCATAGTGACTCTTATGTTAGAGACAAGCATATGCAAGTGACCATTGCATACAACCATTTTGGGGAGGGTCTTGTCCAAAGAATGCCAAGGTGCAGACATGGATATTTCCATGTGGTAAATAATGATTATACCCATTGGGAAATGTATGCAATTGGTGGTAGTGCTAATCCCACAATTAACAGCCAAGGCAACAGATATCTTGCCCCTCTCAACACCTTTGCTAAGGAGGTAACAAAGAGGGTGGAAACAGAGGAAAACACATGGAAAAGCTGGAATTGGAGGTCTGATGGAGATCTTCTACTGAATGGAGCCTATTTTATTTCATCAGGAGCAAGATCTGCAGCTAGTTATGCTAGAGCCTCAAGTTTGTCAGCAAAATCATCTTCTGTGGTTGGTACCCTTACCTCTGGTGCTGGTGTCCTAAACTGCCGCAGAGGTATCATGTGTTAA 1344 0.4323 MKLHYLQCFTFIILVMPLLLTAANSINYNHNQNQKEKETRGDIVGEAKLENSSMAETERSGYTLNQNAVPDEIASMVDMTIHNYTKRRNLSFFSCGTGNPIDDCWRCDKLWYRHRKRLANCAIGFGHNAIGGRDGRYYVVTDPSDKDVINPKQGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDARGFNVHIAHGACITIQYITNVIIHGLNIHDCIQTGNAMVRSSPSHFGWRTMADGDGISIFGASHIWIDHNSLSNCADGLIDAIIGSTAITISNNYFTNHNEVMLLGHSDSYVRDKHMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPLNTFAKEVTKRVETEENTWKSWNWRSDGDLLLNGAYFISSGARSAASYARASSLSAKSSSVVGTLTSGAGVLNCRRGIMC* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1772 447 SUPERFAMILY Pectin lyase-like 77 442 IPR011050 -
Lan11g1772 447 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Lan11g1772 447 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Lan11g1772 447 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Lan11g1772 447 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Lan11g1772 447 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Lan11g1772 447 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Lan11g1772 447 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Lan11g1772 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Lan11g1772 447 Gene3D - 98 440 IPR012334 -
Lan11g1772 447 SMART amb_all 173 370 IPR002022 -
Lan11g1772 447 PANTHER PECTATE LYASE 18-RELATED 44 444 IPR045032 GO:0030570
Lan11g1772 447 Pfam Pectate lyase 200 362 IPR002022 -
Lan11g1772 447 PANTHER PECTATE LYASE 44 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1772 Lan-Chr11 34416552 34424662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1772 49 447 Polysaccharide Lyase AT4G13710 75.921 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1772 K01728 - gmx:100809277 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g1292 7 17872592 17880946 Lan11g1772 11 34416552 34424662 LSH