Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1750 ATGGCTTCGCGTAGAGAATCTTCATTCTGGTGTTACAGATGCAATCGAATCGTTAGGGTTCCATTAATCGCCGGTCAAAACTCTCCATTCTGCCCCTATTGCACTACCGGATTTCTCGAAGAAATCAGAAACCCTAATCCCTCCGATCAAGGCGGTGACAGGAGGACCACCACTCCCACAGGCAGCGGCGACCGGTCGCCGTTCAACCCCGTAATCGTCCTCCGCAACGGAAACGATGTCGTTTCGTCTTCCTCAGAAACACGCAACTTCGAGCTCTATTACAACGACGTCGTTTCTGGATCAGGTCTTCGTCCATTACCCGATACCGTAACCGAGTTTTTAATGGGTTCAGGGTTCGACCACCTATTGAATCAGCTCACTAATTTAGAAGGAACCGCGGTTCAATTATCAGACCGGCCGGGCCAGTCTTTTTACCCGATAGGGGCGTCAAAAACTGCTATCGAGTCAATGCCAGTTGTTAAAATAATTCCAACACATGTGGATGCGGAATCACAATGTGCTGTTTGCATGGAACCTTTCGAGCTCGATTGCGATGCTCGAGAGATGCCGTGCAGCCACATTTACCACTCTGGCTGCATCCTCCCGTGGCTATCGGTGCGGAACTCGTGCCCTGTGTGTAGGCATGAGCTCCCCACCGAGGGCACAGGGGAGGATGCTGTGGGGTTGACTATATGGAGACTCCCTGGAGGAGGGTTTGCTGTGGGGAGGTTCATTGGTGGTGTTGGTGGAGAACTTCCTGTTGTGTACACTGAAATGGATGGTGGGTTTAATGGTATTGTTGGTGGTGGTGGTGTTGTTTCTAGTAGGATCTCTTGGGAGTCTAGTTTGGGTAGAAGAAGATCAAGGGACAGAAGAGGATTTGGTGGTGTTTTGCGCAGCGTGTTTTCGTATTTTAGGAGAATTAGGAGTTCAGTTTCGAGTAATTCGGGGATTAGTGAAAGATCTAGGTCTAGCACTGTGTTCTCTAGATTGTCAAGGAGGGGCAGTTAG 1011 0.4985 MASRRESSFWCYRCNRIVRVPLIAGQNSPFCPYCTTGFLEEIRNPNPSDQGGDRRTTTPTGSGDRSPFNPVIVLRNGNDVVSSSSETRNFELYYNDVVSGSGLRPLPDTVTEFLMGSGFDHLLNQLTNLEGTAVQLSDRPGQSFYPIGASKTAIESMPVVKIIPTHVDAESQCAVCMEPFELDCDAREMPCSHIYHSGCILPWLSVRNSCPVCRHELPTEGTGEDAVGLTIWRLPGGGFAVGRFIGGVGGELPVVYTEMDGGFNGIVGGGGVVSSRISWESSLGRRRSRDRRGFGGVLRSVFSYFRRIRSSVSSNSGISERSRSSTVFSRLSRRGS* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1750 336 Pfam Ring finger domain 172 214 IPR001841 -
Lan11g1750 336 Pfam Protein of unknown function (DUF1117) 227 325 IPR010543 -
Lan11g1750 336 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC2A-RELATED 5 293 - -
Lan11g1750 336 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 5 293 - -
Lan11g1750 336 SMART ring_2 173 213 IPR001841 -
Lan11g1750 336 ProSiteProfiles Zinc finger RING-type profile. 173 214 IPR001841 -
Lan11g1750 336 Pfam zinc-ribbon 8 42 IPR039525 GO:0061630
Lan11g1750 336 MobiDBLite consensus disorder prediction 49 65 - -
Lan11g1750 336 CDD RING-H2_RNF181 172 217 - -
Lan11g1750 336 MobiDBLite consensus disorder prediction 43 69 - -
Lan11g1750 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 220 IPR013083 -
Lan11g1750 336 SUPERFAMILY RING/U-box 153 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1750 Lan-Chr11 34085917 34087786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1750 105 220 C3H Transcription Factor Family AT5G01980 41.379 3.54e-21 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1750 - - gmx:121172634 328.946