Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1721 ATGTCAAATTTGCACATGTCTCATGTTGATTTAGAGCAAGGACATAATCGTCATTCTGTTGTTGGAAGTGATGTGAGTGTTGCTGAGGGAGGGAGTCAATGCTTTTCTGATGCAGATGATGGTTCTTGTTACTCTCATTTCTATTCAATAAATGGTGGTGAGTGTGATGATTATAGCTTTGATTGTGTTTCTGATATTGAACTTGAGGGTGTTGCTGATTCTGGGAGAGTTTCTTCTGTCACTGAATGTTCTGTGGAAGTTGAAATTGCAAGTGTGGTTCCTGAGATGAAGGTGCATTTGGGTAATAAAGTGGAAAGAGATTGTAGGATTTGTCACATGGGTTTGGAGAGTGATAGTCATGAATCTGGAGTTCCAATTGTGTTGGGTTGTTCTTGTAAGGATGATTTAGCTGCAGCTCACAAGAACTGTGCTGAAACCTGGTTCAAGATTAAGGGTAATAGGACTTGTGAAATTTGTCAATGTGTTGCACAAAATGTTTTTGGACCAAATGACGAACCAACAGAGCATTCGAGTAACTATGCAACTACAGCAGCTATACTCTCAGTACCTGCTCCTCCATCCGAGCCTCCCCGATTTTGGCATGGTCATCGCTTCCTGAATTTTCTGCTCGCTTGTATAGTTTTTATATTTGTCATATCATGGCTTTTTCGCATTAAAGTGCCCTCATCCTAA 693 0.4055 MSNLHMSHVDLEQGHNRHSVVGSDVSVAEGGSQCFSDADDGSCYSHFYSINGGECDDYSFDCVSDIELEGVADSGRVSSVTECSVEVEIASVVPEMKVHLGNKVERDCRICHMGLESDSHESGVPIVLGCSCKDDLAAAHKNCAETWFKIKGNRTCEICQCVAQNVFGPNDEPTEHSSNYATTAAILSVPAPPSEPPRFWHGHRFLNFLLACIVFIFVISWLFRIKVPSS* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1721 230 CDD RING_CH-C4HC3_MARCH 108 160 - -
Lan11g1721 230 SMART ringv_2 107 160 IPR011016 GO:0008270
Lan11g1721 230 Pfam RING-variant domain 108 159 IPR011016 GO:0008270
Lan11g1721 230 ProSiteProfiles Zinc finger RING-CH-type profile. 100 166 IPR011016 GO:0008270
Lan11g1721 230 SUPERFAMILY RING/U-box 103 163 - -
Lan11g1721 230 PANTHER ZINC FINGER, RING-CH-TYPE 5 229 - -
Lan11g1721 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 167 IPR013083 -
Lan11g1721 230 PANTHER OS01G0850200 PROTEIN 5 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1721 Lan-Chr11 33587704 33591189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1721 67 230 C3H Transcription Factor Family AT5G05830 55.689 5.07e-57 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1721 - - gmx:100808666 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g1351 7 18688954 18692256 Lan11g1721 11 33587704 33591189 LSH