Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1716 ATGCTTCAGATTCGGCTTACTAAGGCCCCTTCCTCAGAAGGATCAGCAGGAGTAAAGCTGTCACCTGTCGAGACTGTCACGGTTGCTTGCCCGGATCACCTAATCCTTGCTGATCTCCCTGTTGCAAAGGCTATTGGAGGAGCTACTGCTACTTCCCTTGTTAAAACTTTGGGACGTAGATCCCGCTGCCAACTTGGTGAGCGAGTCCGTTTCTGTGTTCGTTGTGATTTCCCGATTGCTATCTATGGACGGCTGAGCCCTTGTGAACATGTCTTCTGTCTCGATTGTGCTAGAAGTGATTCGTTGTGCTATCTGTGTGACGAACGGATCCAGAAGATTCAGACAATCAAAATGATGGAAGGAATCCTCATATGTGCTGCTCCTCACTGTCTGAAATCTTTTCTGAAGAAGGCTGATTTTGAATCTCATATCCAAGACAGCCATGCTGACCTTCTTCGACCCAATGCAGACAAAGAAGATGGAAACGAGTCAGAGGCACAGCGTGTCAGGCAATCTACAGCTTCAGACTCCACTGCTCGAGGTCCCCAAAGACCGTTTTTTTCTCCCGGTTCGAATCCCCAGCTCCATGACCAGGAAGAAAAAACTCATCGACAACGACCAAGAGATCAACCACCTTCAAGGTCAAATATGCAGTCAAATCCACCATATTTCAGTCAACATCACCCTTCAGATACCCCTTCTGGCTCCATTGGAGGCGTTCAACAGGGCTTCCATCAACAAAGTTTCGGTATGCACCATACGCTGCAAGAATCTTCACAGTTTTCAGACAGGCAGCAATCAGTTGGTCTAGAGACTCAATTTCCAGAGTATCCATCAATGCACTCAGGCCAGCCTCCCAACATCCCCACACTGGTTACTTCGAACCCAATGCCGAACCCTCCACTGCCATTTGGTTACCCTCCTTACCCACAGGAAAGAGGTCAACCATTTTATGCTGCTCCCTATGATAATATTCCTAGGCAGGACTCAGCTTCTAATATAGGTGGGGACAAGAGTTCATGGCATGGTTTCACACAGGGGGGTGTCCCAAATGGCCCAAAATTTCCAGGAAATTATCCCCAGCCCTGGCATGCTGGAATGGATGGTGTGACTTTTGAACAAGGACAGGGTGGTATGGTACCACAGCGCGTGGCTCTGCCTCCACCACTCTCGCAACCGCCCCACGTGCCACATTTGAAACAGAATTACTATTCTGGTGAGGGTGGACATGATGGGCAGGGTTATGGGTGGCAGCAGCATCATGATAACAGTGATAACTTTGGTGGCCAAGGCTAG 1296 0.49 MLQIRLTKAPSSEGSAGVKLSPVETVTVACPDHLILADLPVAKAIGGATATSLVKTLGRRSRCQLGERVRFCVRCDFPIAIYGRLSPCEHVFCLDCARSDSLCYLCDERIQKIQTIKMMEGILICAAPHCLKSFLKKADFESHIQDSHADLLRPNADKEDGNESEAQRVRQSTASDSTARGPQRPFFSPGSNPQLHDQEEKTHRQRPRDQPPSRSNMQSNPPYFSQHHPSDTPSGSIGGVQQGFHQQSFGMHHTLQESSQFSDRQQSVGLETQFPEYPSMHSGQPPNIPTLVTSNPMPNPPLPFGYPPYPQERGQPFYAAPYDNIPRQDSASNIGGDKSSWHGFTQGGVPNGPKFPGNYPQPWHAGMDGVTFEQGQGGMVPQRVALPPPLSQPPHVPHLKQNYYSGEGGHDGQGYGWQQHHDNSDNFGGQG* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1716 431 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 377 IPR040383 GO:0016567|GO:0061630
Lan11g1716 431 CDD RING-HC_HAKAI_like 71 106 IPR040380 -
Lan11g1716 431 MobiDBLite consensus disorder prediction 167 195 - -
Lan11g1716 431 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Lan11g1716 431 MobiDBLite consensus disorder prediction 211 242 - -
Lan11g1716 431 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 1 377 - -
Lan11g1716 431 MobiDBLite consensus disorder prediction 196 210 - -
Lan11g1716 431 MobiDBLite consensus disorder prediction 417 431 - -
Lan11g1716 431 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Lan11g1716 431 MobiDBLite consensus disorder prediction 386 431 - -
Lan11g1716 431 MobiDBLite consensus disorder prediction 151 242 - -
Lan11g1716 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
Lan11g1716 431 MobiDBLite consensus disorder prediction 151 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1716 Lan-Chr11 33485095 33487777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1716 1 428 C2H2 Transcription Factor Family AT5G01160 43.537 4.89e-101 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1716 K15685 - gmx:100817582 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g1360 7 18811968 18823795 Lan11g1716 11 33485095 33487777 LSH
Lan11g1716 11 33485095 33487777 Lan13g1118 13 16687313 16691279 LSH