Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1702 ATGACGAAAGGCAAGGGAGCAGCAAGGAAATCGAAGGAAGTATTGAAGCCTGTTGATGACCGACAGGTAGGAAAGCGAAAGGCTGCTTCTAAACCAGAAAAGAGGATCGTGCAAAAGTCGAAGAAGGCCAAGAAAGATCCCAACAAGCCAAAAAGACCTCCCAGTGCTTTTTTCGTCTTCCTAGAGGAGTTCAGGAAGACCTTTAAGGCCGAAAATCCTAATGTGAAAGCCGTATCAGCTGTTGGGAAAGCCGGAGGAGAGAAATGGAAATCGCTGACTAAGGCCGAAAAAGCTCCGTATGAAGCTAAGGCTGCAAAAAGGAAAGTTGAGTATGAAAAACTTATGAATGCCTATAATAAAAAGCAGGCAAGTTCGGCTAATGATGAAGATGATGATGAATCAGACAAGTCCAATTCTGAAGTAAATGATGAGGAGGATGGCTCGAGTAGAGAGGATGGCCACAAGGAGGATGATGACGATAACGACGACGATGAAGATGATGATGAGGATGACGACTGA 519 0.447 MTKGKGAARKSKEVLKPVDDRQVGKRKAASKPEKRIVQKSKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPNVKAVSAVGKAGGEKWKSLTKAEKAPYEAKAAKRKVEYEKLMNAYNKKQASSANDEDDDESDKSNSEVNDEEDGSSREDGHKEDDDDNDDDEDDDEDDD* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1702 172 MobiDBLite consensus disorder prediction 1 40 - -
Lan11g1702 172 MobiDBLite consensus disorder prediction 141 155 - -
Lan11g1702 172 SUPERFAMILY HMG-box 41 122 IPR036910 -
Lan11g1702 172 Gene3D High mobility group box domain 24 135 IPR036910 -
Lan11g1702 172 MobiDBLite consensus disorder prediction 156 172 - -
Lan11g1702 172 MobiDBLite consensus disorder prediction 82 104 - -
Lan11g1702 172 MobiDBLite consensus disorder prediction 89 104 - -
Lan11g1702 172 CDD HMGB-UBF_HMG-box 50 115 - -
Lan11g1702 172 Pfam HMG (high mobility group) box 50 119 IPR009071 -
Lan11g1702 172 PANTHER HIGH MOBILITY GROUP B PROTEIN 1 2 162 - -
Lan11g1702 172 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 2 162 IPR031061 -
Lan11g1702 172 SMART hmgende2 49 120 IPR009071 -
Lan11g1702 172 MobiDBLite consensus disorder prediction 1 54 - -
Lan11g1702 172 MobiDBLite consensus disorder prediction 120 172 - -
Lan11g1702 172 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 50 119 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1702 Lan-Chr11 33328529 33332246 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lan11g1702 HMG_box 2.6e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1702 K25507 - egr:104419103 202.986