Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1696 ATGGAAATGGCTTCTAGCCCCCGCACCGTTGAAGATATCTTCAAAGACTTTAGCGCTCGAAGAACCGGTGTTGTTCGTGCTTTGACTCATGATGTTGATGAATTTTATGGTCTCTGTGATCCAGATAAGGAGAACTTGTGCCTCTATGGACATCCGAATGAAACATGGGAAGTGACTCTGCCAGCAGAGGAAGTTCCACCGGAGCTCCCTGAGCCAGCTCTTGGAATCAATTTCGCTAGAGATGGTATGAACCGCAGGGACTGGCTGTCTCTTGTTGCTGTGCACAGTGATTCATGGTTGCTTTCTGTCGCATTTTATCTTGGAGCTCGTCTTAATCGCAATGAAAGGAAACGTTTATTTAGCTTGATCAATGATCTTCCCACAGTTTTTGAAGTTGTTACTGACAGGAAACCAATTAAGGAAAAGTCCACTGTGGATAGTGGAAGCAAATCTCGAGGTAGCAGCAAGAGATCTAGTGATGGGCAAATTAAAAGCAACCCGAAGTTTGATGAGGGATATGAGGAGGAAGAAGATGAGCATAGTGAAACCCTTTGTGGTAGCTGTGGCGGCAATTACAATGCTGCCGATGAATTTTGGATTGCCTGTGATATATGTGAGAGGTGGTTCCACGGGAAATGCGTGAAGATGACCCCTGCAAAGGCTGATAGCATAAAGCAATACAAGTGCCCTGCTTGCAGCTTAAGGCGGGGTAGGCCTTAA 720 0.4583 MEMASSPRTVEDIFKDFSARRTGVVRALTHDVDEFYGLCDPDKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTDRKPIKEKSTVDSGSKSRGSSKRSSDGQIKSNPKFDEGYEEEEDEHSETLCGSCGGNYNAADEFWIACDICERWFHGKCVKMTPAKADSIKQYKCPACSLRRGRP* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1696 239 CDD PHD_AL_plant 184 235 IPR044104 -
Lan11g1696 239 SMART PHD_3 184 233 IPR001965 -
Lan11g1696 239 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Lan11g1696 239 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 238 - -
Lan11g1696 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 233 IPR013083 -
Lan11g1696 239 ProSitePatterns Zinc finger PHD-type signature. 185 232 IPR019786 -
Lan11g1696 239 ProSiteProfiles Zinc finger PHD-type profile. 182 235 IPR019787 -
Lan11g1696 239 MobiDBLite consensus disorder prediction 148 162 - -
Lan11g1696 239 PANTHER CPG BINDING PROTEIN 3 238 IPR045104 GO:0006355|GO:0042393
Lan11g1696 239 MobiDBLite consensus disorder prediction 141 173 - -
Lan11g1696 239 Pfam PHD-finger 185 233 IPR019787 -
Lan11g1696 239 SUPERFAMILY FYVE/PHD zinc finger 173 237 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1696 Lan-Chr11 33261464 33265305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1696 4 238 Alfin-like Transcription Factor Family AT5G05610 75.949 4.72e-116 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lan11g1696 Alfin 1.6e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1696 - - gmx:100793126 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g1381 7 19138460 19155186 Lan11g1696 11 33261464 33265305 LSH