Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1695 ATGGGTGTAGACTACTACAAGGTTCTTCAGGTAGATAGAAGCGCCAGCGATGATGATCTTAAGAAAGCATATCGAAAGCTTGCAATGAAGTGGCATCCTGATAAGAACCCTAACAACAAGAAAGATGCTGAAGCCAAGTTCAAGCAAATCTCTGAAGCCTATGATGTTTTGAGTGATCCACAAAAGCGAGCTGTGTATGATCAGTATGGCGAGGAGGGGCTGATGGGGCAGGTGCCACCACCGGGAGCTGGGGGTTTTCCCGGTGGGAGCAATGGCAGTCAGACATCTTTCCGGTTCAACTCTAGAAGTGCAGATGATATATTTTCTGAGTTTTTCGGGTTCTCCAGTCCCTTTGGTGGAATGGGAGATATGGGTAGCCGTGCTGGCCCCTCTGGCTTTTCTAGGGGAGGTGTGTTTGGGGATGATATCTTTGCCCAATTTAGGGGTGGTGCTGGAGATGGCTCTGGGCATATGCCTAGGAAAGGTGCAGCCATAGAGAGAACACTGCTATGTAGTTTGGAAGATTTGTATAAAGGGATTACCAAGAAAATGAAGATTTCAAGGGATGTTATCGATTCCAGTGGGAGGCCCACCACGGTAGAGGAAATTCTTTCAATTGTGATCAAACCAGGTTGGAAGAAGGGAACAAAGATAACTTTTCCAGAGAAAGGAAATGAACAGAGAGGAGTTATACCTGCAGACCTTGTCTTCATCATTGATGAAAAGCCTCACAGTGTCTTTAAGAGGGATGGCAATGATCTTGTTATCACACAAAAGACATCTCTTGTAGAAGCCTTGACAGGTTACACGGCCCAGCTGACAACCCTTGATGGACGAAATCTTACTGTCCCCATAAATTCCATCATTAGTCCAACATATGAAGAAGTTGTTAATGGGGAGGGTATGCCCATCCCTAAAGATCCTTCGAAGAAGGGGAACTTGAGAATCAAGTTCAATATCAAGTTTCCTTCTAGACTTACATCAGAGCAGAAAAGTGGGATTAAGCGATTATTGACTTCTCCATGA 1026 0.4503 MGVDYYKVLQVDRSASDDDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLMGQVPPPGAGGFPGGSNGSQTSFRFNSRSADDIFSEFFGFSSPFGGMGDMGSRAGPSGFSRGGVFGDDIFAQFRGGAGDGSGHMPRKGAAIERTLLCSLEDLYKGITKKMKISRDVIDSSGRPTTVEEILSIVIKPGWKKGTKITFPEKGNEQRGVIPADLVFIIDEKPHSVFKRDGNDLVITQKTSLVEALTGYTAQLTTLDGRNLTVPINSIISPTYEEVVNGEGMPIPKDPSKKGNLRIKFNIKFPSRLTSEQKSGIKRLLTSP* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1695 341 Gene3D DnaJ domain 3 124 IPR036869 -
Lan11g1695 341 CDD DnaJ 4 59 IPR001623 -
Lan11g1695 341 SUPERFAMILY Chaperone J-domain 3 95 IPR036869 -
Lan11g1695 341 Gene3D - 163 242 - -
Lan11g1695 341 Gene3D - 244 324 - -
Lan11g1695 341 Pfam DnaJ C terminal domain 165 323 IPR002939 -
Lan11g1695 341 PRINTS DnaJ domain signature 6 24 IPR001623 -
Lan11g1695 341 PRINTS DnaJ domain signature 24 39 IPR001623 -
Lan11g1695 341 PRINTS DnaJ domain signature 42 62 IPR001623 -
Lan11g1695 341 PRINTS DnaJ domain signature 62 81 IPR001623 -
Lan11g1695 341 SUPERFAMILY HSP40/DnaJ peptide-binding domain 166 244 IPR008971 GO:0006457|GO:0051082
Lan11g1695 341 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Lan11g1695 341 SUPERFAMILY HSP40/DnaJ peptide-binding domain 246 332 IPR008971 GO:0006457|GO:0051082
Lan11g1695 341 CDD DnaJ_C 165 326 - -
Lan11g1695 341 PANTHER BNAANNG28460D PROTEIN 1 340 - -
Lan11g1695 341 Pfam DnaJ domain 4 67 IPR001623 -
Lan11g1695 341 SMART dnaj_3 3 62 IPR001623 -
Lan11g1695 341 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Lan11g1695 341 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1695 Lan-Chr11 33226747 33230494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1695 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 5.42e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1695 K09510 - gmx:100818358 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1695 11 33226747 33230494 Lan12g0231 12 4738449 4741053 PCT
Lan12g0231 12 4738449 4741053 Lan11g1695 11 33226747 33230494 PCT