Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1689 ATGCGCAAGTCTTTCAAAGATTCCCTCAAAGCTCTTGAAGCTGATATACACTTTGCCAATACACTAGCTTCCGATTATGCGAGTGACCGCGACGGCACCTGCCTCCAAATGAGATTGTCCTACAGCCCAGCTGCTCAGTTTTTCCTATTTTTGGTTCAGTGGACTGATTGTCACCTTGCTGGGTCCTTAGGACTGCTTAGAATTCTTATATACAAGGCATATAAGGATGAGAAATCAACCATGTCTATTTACAGAAGGAAAGCCAGCCTGAAGGAATTCTATGGTGTAGTCTTTCCTTCTTTATTGCAACTCCAAAGAGGAATAACTGATGTTGATGACAGGAAACAAAAACATATATGTGCTACCAAGTACAAGGCTAAAGATGTTATGAACAAAGGAAAACTCTCTGAAATTGATGCTGAGAGAGAAGAAGAATGTGATATTTGCATGGAGATGAACACCAAGGTTGTATTGCCCAATTGCAATCATTCAATGTGTATGAAATGCTACAATGATTGGCATGCAAGATCACAATCTTGCCCTTTTTGCCGTGATAGTCTTAAAAGAATGAACTCTGGGGATCTTTGGATTTACATGAGCAACAATGACATAGTTGATTTGACTTCAATCTATAAGGAGAATTTGAAGAGACTATTTATGTATATAGAAAAATTGCCTCTAATTGTGGCTGACCCTATATTCATCTCATACCATCAGCATTGGTAA 726 0.3884 MRKSFKDSLKALEADIHFANTLASDYASDRDGTCLQMRLSYSPAAQFFLFLVQWTDCHLAGSLGLLRILIYKAYKDEKSTMSIYRRKASLKEFYGVVFPSLLQLQRGITDVDDRKQKHICATKYKAKDVMNKGKLSEIDAEREEECDICMEMNTKVVLPNCNHSMCMKCYNDWHARSQSCPFCRDSLKRMNSGDLWIYMSNNDIVDLTSIYKENLKRLFMYIEKLPLIVADPIFISYHQHW* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1689 241 Pfam Zinc finger, C3HC4 type (RING finger) 143 189 - -
Lan11g1689 241 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 231 - -
Lan11g1689 241 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Lan11g1689 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 194 IPR013083 -
Lan11g1689 241 PANTHER RING FINGER PROTEIN 41, 151 1 231 - -
Lan11g1689 241 SUPERFAMILY RING/U-box 133 189 - -
Lan11g1689 241 SMART ring_2 146 183 IPR001841 -
Lan11g1689 241 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1689 Lan-Chr11 33110335 33113904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1689 94 188 C3H Transcription Factor Family AT5G01960 30.693 1.40e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1689 K25840 - tcc:18597553 408.683