Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1667 ATGGGAGGGTGTTGTAGCCATGATGATGCTGTTAGAAGAAAGATGGAAATGGAGGTAGATGATGGAGATTATGAACATGATCATAGTACTCATGTCACATATGAATGTGATGAAGCAAGGGTCATATTAAAAGGATCCTCTATGTGTGTATCAATGTTTAGCCAGCAGGGTAAGAAAGGTGTTAATCAAGATTCAATGACAGTTTGGGAGGACTTCACCGGAGAACAAGATATGATATTTTGCGGTGTGTTCGATGGTCATGGTCCTATAGGACACAAGGTTTCACAATACATCCGTGACAATCTACCCTTAAAACTGTCTTCAGCAATCAGAATTGCACAACAAAAAGCATGCAGATTTTATGATGCTAATGAGTCAGAAAGTGGAAGTTGTTATGATGATATATATGATGATAATAACATAGGCATGTCCCTTGCTTCATGGGAGGGATGTTTTCTCAAGTCCTTTGATGAAATGGATGAACACCTTGCTCAGGAGATTAATATTGACACCTATTGCAGTGGTAGCACTGCTGTAACTGTGGTTAAACAGGGTGACCAGCTGATAATTGGCAATTTAGGTGATTCTCGTGCAGTTCTTTGCACAAGAGGGGACAGAGACCAACTTATTCCTGTTCAACTAACTGTTGACTTGAAACCTGATATTCCAATTGAAGCTTCAAGAATCATTAGCTGTGATGGCAGAGTTTTCGCAGCCGAAGAAGAACCGGATGTGTACAGAATATGGATGCCTGATGATGATTGCCCTGGACTAGCCATGTCAAGAGCCTTTGGAGACTTTTGCCTCAAAGATTATGGCCTCATCTCAGTTCCCGATGTCTTTTACAGAAAACTTACAAAGCAAGATGAATTTGTGGTTTTGGCAACTGATGGGATATGGGATGTGCTGACCAACAGTGAAGTGATAAACATAGTTAGTTCAGCACCAAGGAGGTCCATAGCTGCAAAAATGCTCGTAAAGCGGGCAGTTCGAGCCTGGAGATACAAGTATCCTGGTTCCAAGGTTGATGATTGTGCAGTCATATGCTTGTTTCTGGATGATCAGCCTGTGTTATCACACTCCAAATCCAATAAGAGTGGAAGCCACAGAATCCATAGAAATCAAAGCAAGCACCAGTTTCGTCGCTCGAAATCGACTAGAAATGAAGACACAGAAACTGTGGATGGGAAAGTTGATTTAGAACTGAATGAAGAATGGAAGGCTCTTGGAGGCTTAGTTAGATCGAACTCAATATCGAGACTTCCTCGGCTCGCTAAGAATATGAGTAAAAGGCAAGCATCTAAGTACTATAAAGGGAGTTAG 1323 0.415 MGGCCSHDDAVRRKMEMEVDDGDYEHDHSTHVTYECDEARVILKGSSMCVSMFSQQGKKGVNQDSMTVWEDFTGEQDMIFCGVFDGHGPIGHKVSQYIRDNLPLKLSSAIRIAQQKACRFYDANESESGSCYDDIYDDNNIGMSLASWEGCFLKSFDEMDEHLAQEINIDTYCSGSTAVTVVKQGDQLIIGNLGDSRAVLCTRGDRDQLIPVQLTVDLKPDIPIEASRIISCDGRVFAAEEEPDVYRIWMPDDDCPGLAMSRAFGDFCLKDYGLISVPDVFYRKLTKQDEFVVLATDGIWDVLTNSEVINIVSSAPRRSIAAKMLVKRAVRAWRYKYPGSKVDDCAVICLFLDDQPVLSHSKSNKSGSHRIHRNQSKHQFRRSKSTRNEDTETVDGKVDLELNEEWKALGGLVRSNSISRLPRLAKNMSKRQASKYYKGS* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1667 440 SMART PP2C_4 39 350 IPR001932 -
Lan11g1667 440 ProSiteProfiles PPM-type phosphatase domain profile. 49 352 IPR001932 -
Lan11g1667 440 PANTHER PROTEIN PHOSPHATASE 2C 65-RELATED 1 414 - -
Lan11g1667 440 SUPERFAMILY PP2C-like 40 354 IPR036457 -
Lan11g1667 440 MobiDBLite consensus disorder prediction 360 393 - -
Lan11g1667 440 MobiDBLite consensus disorder prediction 365 381 - -
Lan11g1667 440 CDD PP2Cc 50 352 IPR001932 -
Lan11g1667 440 Pfam Protein phosphatase 2C 73 335 IPR001932 -
Lan11g1667 440 PANTHER ALPHABET, ISOFORM E-RELATED 1 414 - -
Lan11g1667 440 Gene3D - 34 354 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1667 Lan-Chr11 32581800 32585508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1667 1 356 PP2C-type Phosphatase Gene Family AT5G01700 54.213 3.95e-132 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1667 - - gmx:100783603 694.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g1405 7 19567026 19571424 Lan11g1667 11 32581800 32585508 LSH
Lan11g1667 11 32581800 32585508 Lan13g1172 13 17272110 17274980 LSH