Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1574 ATGCAAGGCTCAAATTTTCTCGACGAGGTTGACTGCGCAAACTTCTTGGACCACATCGACGATCTTCTCGATTTCCCCGCTGATGACTCCGACGCTGCGGCCGGAAACTTTGACCTGCCGGAAAATTTCTTTCCCGTCGATTCCGACTCGCAGCCAAGCCCTGAATCGGTTTTAACTGACTCCGGCAATGCCTCGCCGGATATCACGGCAGAGCTCTCCGTTCCGTTTGAAGACATTGTACAATTGGAATGGCTGTCCAAATTTGTGGAGGACTCTTTCTCTGGGGGGAGCCTCACCATGAAGAAGGTAGAACCATGCTGTGGCCCTAAGGAAGATTTGGCACATAATGAGTTCCAAACAGCAAGACCACTTTCTGTCATTGAAACCAGAAACTCCTTTTCTTGTGAGAAGACTGCACCTCACATTTATATCCCGGTGCCTTGTGGACGTGCACGCAGCAAGCGCCGACGTCCTGTAACCTTCAACCCACATCATGTCTTGCAACTCATCTCCCCAGCTTCCTCTGTTAGTGAAAACATGCAGCCTAATGTCACCTCCAGGGCCTCTTTGTGTTCAAAGAAGGACTTTGGGGAGTCTCAAACTGAGATCAAAATACAAAGGCATGCAGCTTCTGGAGAGCATAAGAAGAAAAAGAAAATCAAAGTGTCATTGCCATTGGGCCAAGCTGATAGTAACCATAATTTACCATCACAAACAGTTAGGAAATGTATGCACTGTGAGATAACTAAGACACCACAGTGGAGGGCAGGACCTATGGGGCCAAAAACGCTCTGCAATGCTTGTGGTGTTCGATTCAAGAAAGGCCGTCTATTCCCCGAATACCGGCCTGCTGCAAGTCCAACATTTTGCCCAGCCTTGCACTCAAATTCCCATAAGAAGGTCCTTGAAATGAGAAACAACCCCAGCCAGAAATCCAGCTTTGCAATGGATTCAGATGCCTTACCCGAACTGATTCCAAACACTAACAACAGCCTTACCCTGGAATACATGTGA 1014 0.4803 MQGSNFLDEVDCANFLDHIDDLLDFPADDSDAAAGNFDLPENFFPVDSDSQPSPESVLTDSGNASPDITAELSVPFEDIVQLEWLSKFVEDSFSGGSLTMKKVEPCCGPKEDLAHNEFQTARPLSVIETRNSFSCEKTAPHIYIPVPCGRARSKRRRPVTFNPHHVLQLISPASSVSENMQPNVTSRASLCSKKDFGESQTEIKIQRHAASGEHKKKKKIKVSLPLGQADSNHNLPSQTVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRFKKGRLFPEYRPAASPTFCPALHSNSHKKVLEMRNNPSQKSSFAMDSDALPELIPNTNNSLTLEYM* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1574 337 Pfam GATA zinc finger 243 276 IPR000679 GO:0006355|GO:0043565
Lan11g1574 337 ProSiteProfiles GATA-type zinc finger domain profile. 237 273 IPR000679 GO:0006355|GO:0043565
Lan11g1574 337 MobiDBLite consensus disorder prediction 41 64 - -
Lan11g1574 337 Gene3D - 237 287 IPR013088 GO:0006355|GO:0008270
Lan11g1574 337 CDD ZnF_GATA 242 289 IPR000679 GO:0006355|GO:0043565
Lan11g1574 337 PANTHER GATA TRANSCRIPTION FACTOR 8 1 337 - -
Lan11g1574 337 SMART GATA_3 237 287 IPR000679 GO:0006355|GO:0043565
Lan11g1574 337 PANTHER GATA TRANSCRIPTION FACTOR 1 337 - -
Lan11g1574 337 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 241 300 - -
Lan11g1574 337 ProSitePatterns GATA-type zinc finger domain. 243 268 IPR000679 GO:0006355|GO:0043565
Lan11g1574 337 MobiDBLite consensus disorder prediction 46 64 - -
Lan11g1574 337 PIRSF Txn_fac_GATA_plant 1 331 IPR016679 GO:0003677|GO:0005634|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1574 Lan-Chr11 29497019 29501446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1574 19 305 C2C2-Gata Transcription Factor Family AT4G32890 38.047 1.46e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lan11g1574 GATA 1.8e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1574 - - gmx:100815693 410.223