Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1567 ATGGATTTACAAAGGAATCTCTGTGCCAACACCTGGGCAAGGTCGTGTTCCTTACCCTCTCCTGGGAATGGATTGCAGACAAATATATCCTCAAATCCTCCCCCTTTCCCTGATTTTGGTTTGCAGCATAATCTAGACAAATGGGATGATCCGTCTCTTTCAGATTATGGGGTCGGGGGAGAGACATCTTTTAAAGAGTTTAACCAATCTTCTCAAACTCAGTGTCCACTTTCATATGACTCCAACAATCAGATTAAGAACCCTAATCAAGAAAGTCGCCTGTTGAGTGATTCATCACAAACAATTAAACTCCCGGATTGGGACCCAAGTGTGATGTTGAATAACCTTTCCTTTCTTGAAGACAAGATCCATCATCTCCAGGATCTAGTGCGCTTGATTGTTAGTCAAACAGGCCAACCTTTTGGCCAGCCTAATGAACTTGTAACTCAGGAACAGCAGCTCGTCACAGCTGATCTAACATCGGTTATTGTTCAATTGATCTCAACTGCAGGTACTCTTCTCCCTTCTGTCAGGTATACCCTTTCAAACAGTAGTCCATTGGTTGGACAGCTTAGCCAACCTCGTGAGCTTATTGCTCCCTCCGCGTCAGGCCTGAGTAGCCGAAGTATTCAACCACAAAATAATAATGTCAGCAAATTGCCTGATCATTCCATGCTGAATGATCCACCCAATAATTGTAAAATGGAACAAAACTGTAATATGGAAGAACATGAATTAAAAGATGAAGAAGATGGAGAAGATGGAGAAAACCTTCTGCCTGGTTCCTATGAGATCTTACAATTAGAAAAAGAAGAAATCCTCGCACCTCACACACACTTCTGTACAATTTGCGGGAAGGGATTTAAGAGAGATGCAAATCTTCGAATGCACATGAGAGGTCACGGTGATGAGTACAAAACCCCAGAAGCGCTCGCAAAGCCACATAAAGAACCTGGATCTAAACCACAGCTTATCAAGAGGTATTCCTGCCCTTATGGTGGCTGCAAGCGTAACAAGGATCACAAGAAGTTTCAACCTCTGAAGACTATTTTGTGTGTCAAAAACCATTACAAAAGAACACACTGTGACAGGAGTTACATTTGCAGCAGATGCAACACCAAGAAATTTTCAGTTATGGCAGATCTTAAAACTCATGAGAAACACTGTGGTAAAGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTCTTTGGACACATTGCTCTCTTTCAAGGCCATACACCAGCCATTCCCTTGGATGACATTAAAGTACCGGCTGTGGCACCGGATCAGGACTGCAAAGAAAGTAGTATGGTAGGAAGTATGGACTTCACTTATGGATCAAATCCTTCAAGTGTAAATGGAGTTCAAAATGCCATGGATGTCAAATGCAATATTGATGATCCTATCAATTATTTCTCACCATTGAACTTCGAAACTAACTTCGACGTGTTTAATGACTCAGAAACTTCATTCTCTTTTCTCATGTCTGGAGCATTTAAATCTGCAGGAGACTCAAGTTCTGACAATATTTTGTAA 1554 0.4144 MDLQRNLCANTWARSCSLPSPGNGLQTNISSNPPPFPDFGLQHNLDKWDDPSLSDYGVGGETSFKEFNQSSQTQCPLSYDSNNQIKNPNQESRLLSDSSQTIKLPDWDPSVMLNNLSFLEDKIHHLQDLVRLIVSQTGQPFGQPNELVTQEQQLVTADLTSVIVQLISTAGTLLPSVRYTLSNSSPLVGQLSQPRELIAPSASGLSSRSIQPQNNNVSKLPDHSMLNDPPNNCKMEQNCNMEEHELKDEEDGEDGENLLPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPEALAKPHKEPGSKPQLIKRYSCPYGGCKRNKDHKKFQPLKTILCVKNHYKRTHCDRSYICSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDIKVPAVAPDQDCKESSMVGSMDFTYGSNPSSVNGVQNAMDVKCNIDDPINYFSPLNFETNFDVFNDSETSFSFLMSGAFKSAGDSSSDNIL* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1567 517 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 52 503 IPR044300 GO:0010044|GO:0010447
Lan11g1567 517 Gene3D Classic Zinc Finger 263 332 - -
Lan11g1567 517 ProSiteProfiles Zinc finger C2H2 type domain profile. 279 306 IPR013087 -
Lan11g1567 517 SUPERFAMILY beta-beta-alpha zinc fingers 278 303 IPR036236 -
Lan11g1567 517 SMART c2h2final6 366 388 IPR013087 -
Lan11g1567 517 SMART c2h2final6 279 301 IPR013087 -
Lan11g1567 517 SMART c2h2final6 328 361 IPR013087 -
Lan11g1567 517 ProSitePatterns Zinc finger C2H2 type domain signature. 281 301 IPR013087 -
Lan11g1567 517 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 52 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1567 Lan-Chr11 29335060 29337913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1567 246 517 C2H2 Transcription Factor Family AT1G34370 65.979 5.25e-125 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan11g1567 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1567 - - gmx:100500526 723.391