Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1544 ATGCAAACCCACTCTTTCTCATACATATCCTCTTGTGGAAGTGAAAATGCTGATATAGTTGATGATGAAGAATCTATCTCTCTTTCTCTTGGCCTTCCTGGTCAGAAACACAATCCCAAAGTCTCTAACCAAAACCATTCTTTTCATCACTTGCAAAACCCTACTAACTCTTATGACCAAAGTGGTGTAACAGTTGCCCTACACATTGGTCTTCCCAACACTGATAATTCGCCAAACACTACTTCCATTGCTACCCAACCTCACAATTTGTCTGAGACTCCAATTCAGGGTCAATATTGGATCCCTACTCCAGAACAAATCCTTGTTGGTCCTACACAGTTTTCTTGCATTGTCTGCAACAAAACATTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGTCATGGGTCACAGTATAGGACAGGAGCTGAATCATTGAGAGGATCAAAACCAGCATCATCAATGCTAAGGTTACCATGCTATTGTTGTGCTGAGGGATGCAAGAACAACAGAGAGTATCCAAGGTCAAAACCACTCAAGGATTTTAGGACACTCCAAACACACTACAAGAGGAAACATGGTGAGAAACCATTTGAGTGCAGAAAGTGTGGGAAACCATTTGCAGTAAGAGGAGATTGGAGAACACATGAGAAGAATTGTGGGAAGCTTTGGTTTTGTATTTGTGGTTCTGATTTTAAGCATAAGAGATCCCTTAAAGACCATGTTCGTGCTTTTGGTGATGGTCATGCTCCACACACTGTTGCATCTCAGAGTTGTGATTATTTAGGTGGAGAAAGATATGAAGATGAAAATGAAGAAGAAGAAGAATGTGATGATGAATATGATAATAGTGAAGATGTTGCTGTTACTTTCAATTAA 882 0.4014 MQTHSFSYISSCGSENADIVDDEESISLSLGLPGQKHNPKVSNQNHSFHHLQNPTNSYDQSGVTVALHIGLPNTDNSPNTTSIATQPHNLSETPIQGQYWIPTPEQILVGPTQFSCIVCNKTFNRFNNMQMHMWGHGSQYRTGAESLRGSKPASSMLRLPCYCCAEGCKNNREYPRSKPLKDFRTLQTHYKRKHGEKPFECRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVASQSCDYLGGERYEDENEEEEECDDEYDNSEDVAVTFN* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1544 293 Coils Coil 268 288 - -
Lan11g1544 293 ProSitePatterns Zinc finger C2H2 type domain signature. 116 136 IPR013087 -
Lan11g1544 293 SUPERFAMILY beta-beta-alpha zinc fingers 91 135 IPR036236 -
Lan11g1544 293 PANTHER ZINC FINGER PROTEIN WIP2 3 285 IPR043584 GO:0003700|GO:0010468
Lan11g1544 293 MobiDBLite consensus disorder prediction 269 286 - -
Lan11g1544 293 MobiDBLite consensus disorder prediction 269 293 - -
Lan11g1544 293 PANTHER ZINC FINGER PROTEIN WIP6 3 285 - -
Lan11g1544 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 199 219 IPR013087 -
Lan11g1544 293 Gene3D Classic Zinc Finger 195 261 - -
Lan11g1544 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 141 IPR013087 -
Lan11g1544 293 SUPERFAMILY beta-beta-alpha zinc fingers 180 219 IPR036236 -
Lan11g1544 293 SMART c2h2final6 199 219 IPR013087 -
Lan11g1544 293 SMART c2h2final6 162 194 IPR013087 -
Lan11g1544 293 SMART c2h2final6 114 136 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1544 Lan-Chr11 28120734 28122458 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1544 22 258 C2H2 Transcription Factor Family AT1G13290 71.369 6.95e-119 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan11g1544 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1544 - - aprc:113870355 438.728