Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1543 ATGGATTTCACTGAGAAAATGCAGCGTTTCAAGATGGGGTTTCGTGATTATATCCAAGCATTAGAAGAAGAACGTTGTAAGGTTCAGGTTTTCTCTAAAGAGCTTCCACTTTCTTTGGACCTGATCACACAAGCTATTGAAGGTTGTAGGCAACAGTTGTCTGGGACAACTACAGAGTATAATTTGAATGTGCAATCTGAGTGTTCAGGACAAACAACATCAATGGAAGGTCCTGTTTTGGAGGAGTTCATGCCAATTAAGAAAAGGGGATCCCATGATTTTGGTGATGAAGATGAACAACATTCACATAAGTCCAAGGTTTCAAAGGATAATAATAAGAAATCAGATTGGCTTAAATCTGTTCAGTTATGGAATCCATGTCCCTCAAGTGAAGAGGATGTGACTAGAAAAGTGTCTCTGATGGAAGTAAAGAGAAATGGAAGTGGCGGTGCTTTCCAGCCATTCCACAAAAAGGAGAAAGCTTGCCAGACTATTGAATCATTATGTAAAGCTCCCTCTTCAACCCCTGTAGCTGCAGCAAGTTCGACAGCGGTGACGGTCACCAGAGACAATGCTGAAAGCAGCAAAAAAGAGGATAAAGATGGGGCTAGAAAGCAGCGCCGGTGCTGGTCACAGGAGTTGCATAAATGCTTCTTGCAGGCTCTTCAGCAGCTGGGTGGTGCAGATACCGCCACACCAAAGCAAATCCGAGAGTTGATGAAGGTTGATAGTCTCACCAATGATGAAGTCAAAAGCCATTTGCAGAAATACCGTTTGCACACTAGAAGACCAAGTCCCATGAATCACAACAATGGAATTCCACAACCTGCACCTTTTGTTCTTGTGGGGAACATTTTTGTTCAACCACATGACTATGCAACTGTAGCTTCCTCAACCGCATCCGCAGAACTGACCACAGTTGCAGCACCTGCTGGAATTTATGCACCAGTGGCCACACATCCTCCGGCTGTTTCGCACACACTAGGCGATTCAATTAAGAAGCCGCCGTTTAAGAAAGTACAGCCTTCCGAGTATTCGCACTCAGAAGAAAGGGCTAATCAAAGTGAAGGGGCTGTTCACTCAAACTCCCCTGCTTCATCATCCTCCACACATACCACCACAACTTCCTCGGGCTGTTGA 1140 0.4474 MDFTEKMQRFKMGFRDYIQALEEERCKVQVFSKELPLSLDLITQAIEGCRQQLSGTTTEYNLNVQSECSGQTTSMEGPVLEEFMPIKKRGSHDFGDEDEQHSHKSKVSKDNNKKSDWLKSVQLWNPCPSSEEDVTRKVSLMEVKRNGSGGAFQPFHKKEKACQTIESLCKAPSSTPVAAASSTAVTVTRDNAESSKKEDKDGARKQRRCWSQELHKCFLQALQQLGGADTATPKQIRELMKVDSLTNDEVKSHLQKYRLHTRRPSPMNHNNGIPQPAPFVLVGNIFVQPHDYATVASSTASAELTTVAAPAGIYAPVATHPPAVSHTLGDSIKKPPFKKVQPSEYSHSEERANQSEGAVHSNSPASSSSTHTTTTSSGC* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1543 379 SUPERFAMILY Homeodomain-like 204 263 IPR009057 -
Lan11g1543 379 Pfam Myb-like DNA-binding domain 207 258 IPR001005 -
Lan11g1543 379 MobiDBLite consensus disorder prediction 325 379 - -
Lan11g1543 379 MobiDBLite consensus disorder prediction 178 205 - -
Lan11g1543 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 262 IPR017930 -
Lan11g1543 379 MobiDBLite consensus disorder prediction 89 112 - -
Lan11g1543 379 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 205 260 IPR006447 GO:0003677
Lan11g1543 379 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 375 IPR044787 GO:0003700|GO:0006355
Lan11g1543 379 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 3 375 - -
Lan11g1543 379 MobiDBLite consensus disorder prediction 355 379 - -
Lan11g1543 379 MobiDBLite consensus disorder prediction 191 205 - -
Lan11g1543 379 Gene3D - 204 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1543 Lan-Chr11 28082614 28084971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1543 1 367 G2-like Transcription Factor Family AT1G68670 44.330 1.40e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lan11g1543 Myb_DNA-binding 6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1543 - - aprc:113872943 491.886