Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1512 ATGGAAGACAAGGAAGAACGAAATATGGTTCCATTTCCATTTCCATCACCATCATCAGAGACAGTGACCCAAGTCAAAGGCTTTCAAAGCTTTCAAAGCACCAATGCCACTGTTACTAATGCTGATGGTTCAGACAGCTTCTACATGAAACTCACTGAGTTGTTGGACTCCTCTGGACTCGGTCTAATTGTCAATGTCAGAGAAACATTGCTGGACTTGTACCTGTTTTACTTGGAGGTTACCAAAAGAGGAGGGTATCATCAGGTTGCTAGAGGAAAGAAATGGGGTGAAGTTGTCTCTGCCTTAAAATTGGAAGGATGTAACGCGAAGTTATCTGGTCAAGTTGAAAGGCTATATGCGCGTTTTCTTTACCAATACGAGCGATTATACTTCTACAGGTCTCCTTCAAAACATTCTGCTGCTGCTAGCAGCAACAAAGGTTCATTGAAGGGGAAGTGGAAATCAAGAGCTAGTCTTTCTCAGCTCAAAAATATTCAAGATGGTCAAATGGTGACAAAGATGTGCCCTTATCCCTCTTGCCAAACTACAGCGGGGGATGAATTTGTAGGAGAGCAAGTGGTTCTACCGGCCCCTTCCATTGGCGAAGAAAAGAAGAAACGCCGAGGTGCTCCCCGGGGAAGAAATGGATATCAGATTTTCCTCAAGAATGAATGTGCTCGATTGAAAACTTCGGGCGAGGTCTCAGATGGCACAAACATTCTACGTGTGGCTACCGATGCATGGAACAAGATGTCGGAAACTGAGAAACAACCTTATGTAGAGGAAAGCAAGAAGATCAAGGAAAAATCTAAGGAAGCAATGATCAGTGACACCAAACAGAAAAATACCATGGAATGGAAGGGGCCTAGTGTTAGTGGTGACTACTATATACCTTTGTTACCTGAGACAGATAACTAG 918 0.4346 MEDKEERNMVPFPFPSPSSETVTQVKGFQSFQSTNATVTNADGSDSFYMKLTELLDSSGLGLIVNVRETLLDLYLFYLEVTKRGGYHQVARGKKWGEVVSALKLEGCNAKLSGQVERLYARFLYQYERLYFYRSPSKHSAAASSNKGSLKGKWKSRASLSQLKNIQDGQMVTKMCPYPSCQTTAGDEFVGEQVVLPAPSIGEEKKKRRGAPRGRNGYQIFLKNECARLKTSGEVSDGTNILRVATDAWNKMSETEKQPYVEESKKIKEKSKEAMISDTKQKNTMEWKGPSVSGDYYIPLLPETDN* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1512 305 MobiDBLite consensus disorder prediction 270 294 - -
Lan11g1512 305 CDD HMG-box 211 259 - -
Lan11g1512 305 Pfam HMG-box domain 211 274 IPR009071 -
Lan11g1512 305 Gene3D High mobility group box domain 200 289 IPR036910 -
Lan11g1512 305 ProSiteProfiles ARID domain profile. 41 131 IPR001606 GO:0003677
Lan11g1512 305 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 210 278 IPR009071 -
Lan11g1512 305 Pfam ARID/BRIGHT DNA binding domain 45 127 IPR001606 GO:0003677
Lan11g1512 305 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 1 304 - -
Lan11g1512 305 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 1 304 - -
Lan11g1512 305 SUPERFAMILY ARID-like 42 138 IPR036431 GO:0003677
Lan11g1512 305 SUPERFAMILY HMG-box 202 274 IPR036910 -
Lan11g1512 305 SMART ARID_2 38 127 - -
Lan11g1512 305 Gene3D - 18 150 IPR036431 GO:0003677
Lan11g1512 305 SMART bright_3 42 132 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1512 Lan-Chr11 27145644 27148315 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1512 47 275 ARID Transcription Factor Family AT3G13350 24.345 5.31e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lan11g1512 ARID 5.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1512 - - var:108325455 278.485