Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1496 ATGACAACACAAGAAACTTGTTCAAACTTGGATCTAATACGCCAACATCTCTTAGGAGATATCTCAGATCTCCATCCTGTGAAACTTGAAGACCCTTTACAAGACTTCAATTTCAGTTCATATATTTCAGACCATAATAGCTTCTACAGTTTCATTGAAGAGTATGATTTGGTTGCTGATATGGAGTTTATTGATCAAAGTTCTTCTTCAAAAAATGTTCTTAAGTCCATAGGAACAAACCCCAGAAAGGATACCGAAAAATGCGGTTCCCATGAACCAGTGGTATTATCAGGGAAAAAAGATGAAAAACAAGAACGCGGTGATGAAGGGAAGCGTTATAGAGGAGTGAGGAGAAGGCCATGGGGTAAGTATGCTGCAGAGATTCGTGACCCGTCAAGGAAAGGGTGTAGGGTGTGGTTAGGTACATTTGATAGAGAAATTGATGCTGCTAAGGCTTATGATTGTGCTGCTTTCAAGATGAGGGGTCAGAAAGCTATATTGAACTTTCCTCTAGAGGCTGGAGAGTCTGATCCAAAGCCAAACAATTGTGGAAGAAAAAGAAGAAGAATGGGTGGACTTGAGATGCCTCGGTATACCGACTAA 603 0.4063 MTTQETCSNLDLIRQHLLGDISDLHPVKLEDPLQDFNFSSYISDHNSFYSFIEEYDLVADMEFIDQSSSSKNVLKSIGTNPRKDTEKCGSHEPVVLSGKKDEKQERGDEGKRYRGVRRRPWGKYAAEIRDPSRKGCRVWLGTFDREIDAAKAYDCAAFKMRGQKAILNFPLEAGESDPKPNNCGRKRRRMGGLEMPRYTD* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1496 200 Pfam AP2 domain 112 162 IPR001471 GO:0003700|GO:0006355
Lan11g1496 200 ProSiteProfiles AP2/ERF domain profile. 112 170 IPR001471 GO:0003700|GO:0006355
Lan11g1496 200 MobiDBLite consensus disorder prediction 77 114 - -
Lan11g1496 200 MobiDBLite consensus disorder prediction 80 114 - -
Lan11g1496 200 CDD AP2 111 170 IPR001471 GO:0003700|GO:0006355
Lan11g1496 200 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 189 - -
Lan11g1496 200 SUPERFAMILY DNA-binding domain 112 172 IPR016177 GO:0003677
Lan11g1496 200 MobiDBLite consensus disorder prediction 171 200 - -
Lan11g1496 200 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 5 189 - -
Lan11g1496 200 Gene3D AP2/ERF domain 111 172 IPR036955 GO:0003700|GO:0006355
Lan11g1496 200 SMART rav1_2 112 176 IPR001471 GO:0003700|GO:0006355
Lan11g1496 200 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Lan11g1496 200 PRINTS Ethylene responsive element binding protein signature 152 172 IPR001471 GO:0003700|GO:0006355
Lan11g1496 200 MobiDBLite consensus disorder prediction 179 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1496 Lan-Chr11 26406335 26407341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1496 1 189 AP2-EREBP Transcription Factor Family AT5G07580 40.933 3.39e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan11g1496 AP2 2.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1496 - - ccaj:109813158 261.922