LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan11g1471	ATGTCAGAACCAACCCCTGCCGCCACCGCGCCGCTAACAGCGCAGCCACCGTCTCATAAGAGTTGGGCCGATGAAGCTGACGAAGAATCAAACGCAACGGCATCGTCTAGTTCAGCACCACCACAAACCTCATCACTAGAAGTTGACGATTTAACCATCGAAGATAACAAGAAACCCCCAAAGCTGTTAGACGATCCCGACGATTCCAACATCCAAACGGTTACGTCAGGCGAGACACCCTACACGTCTGCGGCAACATTTGAAGATTTGAATCTGTCGCCGGAACTTCTGAAGGGTCTATACGTGGAGATGAAGTTTCAGAAGCCTAGTAAAATTCAAGCTATAAGTTTGCCTATGATTTTGAACCCTCCTCACAGGGATTTGATTGCTCAGGCGCATAACGGTTCTGGCAAGACGACTTGCTTCGTGCTTGGGATGCTTAGTCGCGTTGATCCTAAGCTTCAGGTTCCTCAAGCTCTCTGCATTTGCCCCACTAGGGAGTTGGCTATTCAGAATACTGAAGTTCTCCGAAAGATGGGGAAGTACACTGGGATTAGTTCAGAATGTGCCATTCCAACAGACAGTAGGGTCGACCTTCCTATAGCGAAGCGGGCGCCGATTATGGCCCAAGTAATTATTGGTACTCCAGGCACAATAAAGAAGTGGATGACTTTTAAGAAGCTCGGTGTAACCAGATTAAAGATACTTGTTTTTGACGAGGCTGATCAAATGCTTGCTGAGGATGGTTTTAAAGATGACTCCTTGAGGATAATGAAAGAGATAGAAAAAAGCAATTCTAATTGTCAGGTTCTTCTGTTTTCTGCCACATTCAATGACATTGTCAAGAATTTTGTTTCAAGGACAGTTAAAAAGGATCATAATAAACTTTTTGTGAAGAAAGAAGAACTATCTTTAGATGCAGTGAAGCAATACAAAGTGCACTGTCCTGATGAACTCTCTAAAATTGAAGTCATAAAAGATTACATATTTGAAATAGGAGAGAACGTGGGGCAAACTATTATATTTGTACGCACAAGAGAAAGTGCAAAAATGTTGCATAAATCACTTGTTGATTTGGGGTATGAGGTTACTTCCATACAAGGTGCTCTTGATCATGAAGAGAGAGACAAGATTGTCAAGGAGTTCAAAGATGGTTTAACTCAAGTTCTGATATCAACTGATGTTCTTGCCCGAGGCTTTGATCAACAACAGATTAATTTGGTTATCAACTATGATCTTCCAGTGAAACATACTCCTGAGTATAACACCCGTGAACGTGAGCCTGATTATGAGGTGTATTTGCACAGGGTTGGTAGGGCTGGACGTTTTGGGCGCAAGGGGGCTGTATTTAACCTAATATGTGGTGAAAGGGATGAAAGGCTTATGTCAAAGATTGAGAACCATTTTGGCACCCATGTAACGGAGGTCAAGGAAAAAAGTGTAGAAGACTATAAGGGCGCTCTTAAAGAGGCTGGTTTACTGCAATGA	1488	0.4294	MSEPTPAATAPLTAQPPSHKSWADEADEESNATASSSSAPPQTSSLEVDDLTIEDNKKPPKLLDDPDDSNIQTVTSGETPYTSAATFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILNPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPKLQVPQALCICPTRELAIQNTEVLRKMGKYTGISSECAIPTDSRVDLPIAKRAPIMAQVIIGTPGTIKKWMTFKKLGVTRLKILVFDEADQMLAEDGFKDDSLRIMKEIEKSNSNCQVLLFSATFNDIVKNFVSRTVKKDHNKLFVKKEELSLDAVKQYKVHCPDELSKIEVIKDYIFEIGENVGQTIIFVRTRESAKMLHKSLVDLGYEVTSIQGALDHEERDKIVKEFKDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTPEYNTREREPDYEVYLHRVGRAGRFGRKGAVFNLICGERDERLMSKIENHFGTHVTEVKEKSVEDYKGALKEAGLLQ*	496

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan11g1471	495	MobiDBLite	consensus disorder prediction	50	65	-	-
	Lan11g1471	495	MobiDBLite	consensus disorder prediction	28	49	-	-
	Lan11g1471	495	CDD	SF2_C_DEAD	308	453	-	-
	Lan11g1471	495	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	85	114	IPR014014	GO:0003724
	Lan11g1471	495	MobiDBLite	consensus disorder prediction	1	16	-	-
	Lan11g1471	495	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	119	295	IPR014001	-
	Lan11g1471	495	Pfam	Helicase conserved C-terminal domain	321	444	IPR001650	-
	Lan11g1471	495	MobiDBLite	consensus disorder prediction	1	77	-	-
	Lan11g1471	495	SMART	ultradead3	105	311	IPR014001	-
	Lan11g1471	495	Gene3D	-	303	485	IPR027417	-
	Lan11g1471	495	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	64	474	-	-
	Lan11g1471	495	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	324	485	IPR001650	-
	Lan11g1471	495	CDD	DEADc_DDX19_DDX25	92	291	-	-
	Lan11g1471	495	SMART	helicmild6	350	444	IPR001650	-
	Lan11g1471	495	PANTHER	DEAD-BOX HELICASE DBP80	64	474	-	-
	Lan11g1471	495	Pfam	DEAD/DEAH box helicase	111	283	IPR011545	GO:0003676\|GO:0005524
	Lan11g1471	495	Gene3D	-	64	302	IPR027417	-
	Lan11g1471	495	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	157	461	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan11g1471	Lan-Chr11	24634592	24641456	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan11g1471	78	476	Eukaryotic Initiation Factors Gene Family	AT1G72730	36.765	1.39e-72	234

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan11g1471	K18655		-	gmx:100778091	743.421