Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1449 ATGTCTACCTCTGCTACTTCTCTATCCCTTCTTTCTCTTTCTCTCCGAACCTTAAAACAACAACAACAACAACCTCAATGCTTTTCTTCACTCTCTCTTCTCAACCCTAACTCCAACCCCATCTCCATTTCCGCAACCTTTCTTCGTTCCCACGCTGCGCCGCGTACGTCGTTGTTGTCGTCTCGCTTCGTCTCCAAGGTTTCACTCTCCGAGTTCGACCAGGAAGAGGGTACTTTTAGCGAAGAAGACGATGAACCCAGTTACAAAAACAACAACAACAACAGCAATGAGTTCAAGCTCTTCGTTGGTAACCTTCCCTTTGGTGTTGACAGTGCTCAACTCGCTGAGATTTTTGAAGGTGCCGGTGAGGTTGAAAGGGTTGAGGTGATTTATGATAAATTGACAGGGAGAAGCAGAGGATTTGGTTTTGTGAATATGTCCTCAGCTGAGGGTGTTGAAGCAGCTGTTCAGCAATTAAATGGATATGAAGTAGATGGAAGGGCACTGAGAGTGAATGCCGGTCCACCTCCTCCTAAGGATGAGAGTTCCCAGTTTGGGAGTTCTCGATTTGATGGGAATTCTCGATTTGATGGGAATTCCCGGTTTGGGAGCGGTCCTCCAAGAGGAGGTGGTTCAGCTGCAGATAATGGAAATCGAGTTCATGTAGGTAATCTTGCATGGGGTGTCGACGAGGGAGCACTTGAGGAATTGTTTGGGGAACAGGGAAAGGTTTTGGAAGCGAAAGTGATATATGACAGGGAAACTGGAAGATCAAGAGGCTTTGGGTTTGTGACCTATGGTTCTCCCGAAGAGGTCAAGAAAGCTGTTCAGTCCTTAGATGGTGCGGACTTAAATGGCAGAGCTATTCGTGTCTCATTAGCAGATGCTAAGCCCCCAAGACGTCAATTTTGA 912 0.4682 MSTSATSLSLLSLSLRTLKQQQQQPQCFSSLSLLNPNSNPISISATFLRSHAAPRTSLLSSRFVSKVSLSEFDQEEGTFSEEDDEPSYKNNNNNSNEFKLFVGNLPFGVDSAQLAEIFEGAGEVERVEVIYDKLTGRSRGFGFVNMSSAEGVEAAVQQLNGYEVDGRALRVNAGPPPPKDESSQFGSSRFDGNSRFDGNSRFGSGPPRGGGSAADNGNRVHVGNLAWGVDEGALEELFGEQGKVLEAKVIYDRETGRSRGFGFVTYGSPEEVKKAVQSLDGADLNGRAIRVSLADAKPPRRQF* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1449 303 Gene3D - 68 212 IPR012677 -
Lan11g1449 303 Gene3D - 213 303 IPR012677 -
Lan11g1449 303 MobiDBLite consensus disorder prediction 168 217 - -
Lan11g1449 303 CDD RRM_HP0827_like 99 172 - -
Lan11g1449 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 176 IPR000504 GO:0003723
Lan11g1449 303 PANTHER OS02G0815200 PROTEIN 1 300 - -
Lan11g1449 303 SMART rrm1_1 99 172 IPR000504 GO:0003723
Lan11g1449 303 SMART rrm1_1 219 292 IPR000504 GO:0003723
Lan11g1449 303 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 1 300 - -
Lan11g1449 303 SUPERFAMILY RNA-binding domain, RBD 91 205 IPR035979 GO:0003676
Lan11g1449 303 MobiDBLite consensus disorder prediction 181 200 - -
Lan11g1449 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 290 IPR000504 GO:0003723
Lan11g1449 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 170 IPR000504 GO:0003723
Lan11g1449 303 SUPERFAMILY RNA-binding domain, RBD 214 302 IPR035979 GO:0003676
Lan11g1449 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 296 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1449 Lan-Chr11 24051339 24053810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1449 100 303 Eukaryotic Initiation Factors Gene Family AT3G16380 29.412 4.23e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1449 - - lang:109360912 522.702