Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1424 ATGGATCGGAAAGAATATTTGCGGGGGCATTCCAATATGAAATGCCAACGGGTGGATGAATCATATGTACCTGTTCTTAAAGATGATGAAATGGAAGATGAGCATTTACTTGAAGAACATAGAAATGGTCATATTTCAATGGATGGCAGTTTGGATTCTCATACAACTTTGAATGGCATGGATGATTTGGGACTGGAGGTGCTTGATGGAATCCTGGATGATGTTGAAATCAATGATCTTGATGGAATCGATGTTTTCTCTGGTGCATGTGACGAGTATTTTTTGGATTGTGACTTTGTCAACGATCCTGAGGTACTAGGCTATGGTCTTTCTAAAGGTTCACTTTTACAAAATTCAAGTTCGGAAAGTCATTCTTCCGGATTTAGTGGAAGTAGCATTGTTGGTGGGGTATCAGAATCAACAAAAGTACCCTCTGCACAACCTGAATGCAAAAATTACTCTCCAGATGGTACAACAACCTCTGAATCCTCTGATGCCTTAAGAAACAATCCAAGTCAACCATCAAATGGAGATTGCATGTACATCATTTCACTTGACATGAAGCATCTGCATGAATTGAATAATGATCACCCTTTAGCTGGTGGTATATTATCTTTTGAGAACGAAAAGGATGCTGCTGAAGAACCCCAGCCTACAGCACTTAGAGAGAAGAGATTCCGCAAGCCCACAAAGAGGTATATTGAAGAGTCTTCAAATTTGAGGTCAAAGGAAAAGGTACCGACTGCTGCTACAAAAAATAAAAATTTGAGTTTGTCATCATGTGATGAACTTAATGTGAGACCTAAAGCATTGGGAAAGATTCCGGACGAGAAGTATCGTAATGAAAATAGTGATGTGACACTTTCTGCGTTAAAAGTTTGCCGGGGACACCCAAAGAAAAAGAAACTTGAAAATGACAAGGAGCCACTTAGCTCAGAGTCTGAGGATGAACCCAAAAGGAAAGATCGGAGAAAGAGTCAGAAAATGTGGACTCTCCCTGAAGTGAAGAAGTTAGTTGATGGCATATCTGAATACGGAATTGGGCGATGGACTAATATAAAGAGGTTTTTCTTTTCTTCTTCAAGCTACCGAACACCCACTGATATCAGGGACAAGTGGCGTAATCTTTTAAGAGCCAGTTCTGCACAAAAATCTTACGACAAAGAGGCTGAGCAAAACGACGAGCTTGCCTTACGGCCCTTACCACTTGATGTGGTACACCGTGTTCGTGAATTGGCTAAAATTCACCCATACCCGAGGGCACGTGGCTCAAAGAAATCATGTGTTCGTAGTAGTCTTGGCAAAAGAAATTTTCAGAGGAAGAGGTGTTCTTAA 1335 0.4075 MDRKEYLRGHSNMKCQRVDESYVPVLKDDEMEDEHLLEEHRNGHISMDGSLDSHTTLNGMDDLGLEVLDGILDDVEINDLDGIDVFSGACDEYFLDCDFVNDPEVLGYGLSKGSLLQNSSSESHSSGFSGSSIVGGVSESTKVPSAQPECKNYSPDGTTTSESSDALRNNPSQPSNGDCMYIISLDMKHLHELNNDHPLAGGILSFENEKDAAEEPQPTALREKRFRKPTKRYIEESSNLRSKEKVPTAATKNKNLSLSSCDELNVRPKALGKIPDEKYRNENSDVTLSALKVCRGHPKKKKLENDKEPLSSESEDEPKRKDRRKSQKMWTLPEVKKLVDGISEYGIGRWTNIKRFFFSSSSYRTPTDIRDKWRNLLRASSAQKSYDKEAEQNDELALRPLPLDVVHRVRELAKIHPYPRARGSKKSCVRSSLGKRNFQRKRCS* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1424 444 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 320 381 IPR017930 -
Lan11g1424 444 SMART sant 326 379 IPR001005 -
Lan11g1424 444 MobiDBLite consensus disorder prediction 290 328 - -
Lan11g1424 444 ProSiteProfiles Myb-like domain profile. 322 377 IPR001005 -
Lan11g1424 444 MobiDBLite consensus disorder prediction 226 242 - -
Lan11g1424 444 MobiDBLite consensus disorder prediction 138 173 - -
Lan11g1424 444 MobiDBLite consensus disorder prediction 299 328 - -
Lan11g1424 444 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 9 441 - -
Lan11g1424 444 PANTHER TRF-LIKE 8 9 441 - -
Lan11g1424 444 Gene3D - 316 427 - -
Lan11g1424 444 MobiDBLite consensus disorder prediction 226 251 - -
Lan11g1424 444 SUPERFAMILY Homeodomain-like 329 393 IPR009057 -
Lan11g1424 444 MobiDBLite consensus disorder prediction 423 444 - -
Lan11g1424 444 CDD SANT_TRF 328 378 - -
Lan11g1424 444 Pfam Myb-like DNA-binding domain 329 377 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1424 Lan-Chr11 23142720 23148463 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1424 326 388 Single Myb Histone (SMH) Gene Family AT1G17520 40.909 2.54e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lan11g1424 Myb_DNA-binding 1.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1424 - - gmx:100810255 521.546