LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan11g1400	ATGGCTCATAGGTTGCTGAGAGATCACGAAGCCGACGGATGGGAACGCTCCGATTTCCCCATCATCTGCGAATCATGTCTCGGCGACAGTCCCTATGTTCGAATGACAAGAGCGGAGTATGATAAGGAGTGCAAAATTTGTACACGGCCTTTTACTGTTTTTAGATGGAGACCTGGTCGAGATGCAAGATATAAGAAAAGTGAGATCTGTCAGACATGTAGCAAATTAAAAAATGTTTGTCAAGTCTGCCTTCTTGATCTTGAATATGGATTACCAGTTCAAGTCCGTGATACAGCTCTGAGTATTGATTCTAATGATGCCATTCCCAAGAGTGATGTTAATAGGGAGTATTTCGCGGAGGAGCACGACCGGAAGGCTAGAGCTGGTATGGATTATGAATCCTCCTTCGGTAAAGCACGCCCAAATGATACTATCCTGAAGCTTCAAAGGACAACACCGTATTACAAAAGAAACCGAGCACATGTTTGTAGTTTCTACATAAGGGGTGAGTGTACTAGAGGAGCTGAGTGCCCTTATAGGCATGAGATGCCAGTGACTGGGGAGTTGTCTCAACAAAATATTAAAGATCGTTATTATGGGGTGAATGATCCAGTGGCTTTAAAGCTACTTGGCAAGGCAGGAGAGATGCCCTCTCTGGAGGCTCCTGAGGATGAGAGCATTAAAACTCTTTATGTTGGTGGACTTGATGCCAGAGTCACTGAGCAAGATTTGCGGGATAACTTCTATGCCCATGGTGAAATTGAATCCATCAAACTGGTTCTTCAGCGGGCTTGCGCATTTGTAACCTATACAACCAGAGAAGGTGCCGAAAAGGCAGCAGAAGAACTCTCAAACAAACTGGTTATTAAGGGCCTAAGGCTAAAGCTAATGTGGGGCAGGCCCCAGTCGGCAAAACCTGACTCAGATGGCTCTGATCAAGCGAGGCAGCAGGCATCTGTGGCTCATAGTGGGTTATTGCCTCGAGCAGTTATATCACAGCAGCAGAGCCAGGACCAGAACCAAGGAATGGTTTACTATACCAATCCACCTCCTCAACAGGAAAGAAGTTATTACCCATCAATGGATCCTCAAAGAATGGGTGCTCTTGTTTCATCCCAAGAGGGTCCTCCTGGGGGACCTTCCGGGTCAGGGGAGAACATACCCAATATGGAGAAGCAGCAAATGCAACATTATCCCCATCCAATGATGCCTCCACCACCAGGCCAATATCATCATCAGTATTATCCTCCATATGGCTATATGCCACCAGTTCCCCCTTATCAACAACAGTACCCACCACCACCGTACAATGCTCCAATGCCTCCGTCGCATCCACCAGCTGTAAGTCATCCTTATCAGCATTCTATGCAGCCAGGGTCTTCACAAGCAGGATCTAGTCAGGGTGGCTCTGCTCCGGCCGAAGCCGGAACATCATCAGGGTCACAGCAGCAGTGA	1455	0.4735	MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAEEHDRKARAGMDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMPSLEAPEDESIKTLYVGGLDARVTEQDLRDNFYAHGEIESIKLVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQSAKPDSDGSDQARQQASVAHSGLLPRAVISQQQSQDQNQGMVYYTNPPPQQERSYYPSMDPQRMGALVSSQEGPPGGPSGSGENIPNMEKQQMQHYPHPMMPPPPGQYHHQYYPPYGYMPPVPPYQQQYPPPPYNAPMPPSHPPAVSHPYQHSMQPGSSQAGSSQGGSAPAEAGTSSGSQQQ*	485

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan11g1400	484	MobiDBLite	consensus disorder prediction	306	320	-	-
	Lan11g1400	484	MobiDBLite	consensus disorder prediction	426	484	-	-
	Lan11g1400	484	MobiDBLite	consensus disorder prediction	300	389	-	-
	Lan11g1400	484	Gene3D	-	149	208	-	-
	Lan11g1400	484	MobiDBLite	consensus disorder prediction	453	484	-	-
	Lan11g1400	484	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	230	288	IPR000504	GO:0003723
	Lan11g1400	484	SUPERFAMILY	CCCH zinc finger	159	182	IPR036855	GO:0046872
	Lan11g1400	484	SMART	rrm1_1	229	297	IPR000504	GO:0003723
	Lan11g1400	484	SMART	c3hfinal6	157	183	IPR000571	GO:0046872
	Lan11g1400	484	Pfam	Torus domain	142	194	IPR032297	-
	Lan11g1400	484	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	228	301	IPR000504	GO:0003723
	Lan11g1400	484	PANTHER	PRE-MRNA-SPLICING FACTOR RBM22	1	465	IPR039171	GO:0003723
	Lan11g1400	484	ProSiteProfiles	Zinc finger C3H1-type profile.	157	184	IPR000571	GO:0046872
	Lan11g1400	484	MobiDBLite	consensus disorder prediction	426	448	-	-
	Lan11g1400	484	CDD	RRM_RBM22	227	300	-	-
	Lan11g1400	484	SUPERFAMILY	RNA-binding domain, RBD	221	309	IPR035979	GO:0003676
	Lan11g1400	484	MobiDBLite	consensus disorder prediction	328	359	-	-
	Lan11g1400	484	Gene3D	-	213	309	IPR012677	-
	Lan11g1400	484	PANTHER	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE	1	465	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan11g1400	Lan-Chr11	22188618	22192579	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan11g1400	220	289	Eukaryotic Initiation Factors Gene Family	AT1G49760	33.333	5.69e-06	47.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan11g1400	K12872		-	gmx:100778975	757.673