Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1399 ATGGTTAGATCCTGCTGGAAACCTTCTGTAGAGGGTGATGATGGAGATGAGAGTGGAAGAGTTGATGGACTGCTATGGTATAAAGATTTTGGGAACCATCTTTATGGGGAATTTTCAATGGCTGTTATTCAAGCCAATAGTTCATTGGAGGATAGAGGTCAACTTGAATCTGGACCTTTGAGTTCCAACCATTTGGGTCCTCAAGGGACTTTTATAGGTGTCTATGATGGTCATGGTGGAACTGAGGCCTCACAGTTTGTCAGTGACAATCTTTTCTGCAATCTCAAGAGGCTTACAAGTGAACATCAAGGCATGTCAGAAAATGTTATAAAAAAGGCATACTCAGCAACAGATGAAGGGTTTCTATCTCTTGTGAAGAAACATTGGCTAAATAAGCCACATATTGCATCCACAGGTACTTGTTGTTTGGTGGGGATAATTTGCAATGACATGTTATATATTGCAAATTCTGGAGACTCTAGAGCTGTGTTAGGAAGAGTAGAGAGAGCAACAAAGGAAACATCAGCTATACAATTATCCACAGAACACAATGTTAATCAAGAAACAATGAGAGATGAAATTCGGTCAAAGCACCCATATGATTCTCAAATAGTGGTTATGAGACACAATGTTTGGCGTGTGAAAGGCCTCATACAGGTTTCAAGATCCATAGGTGATGCATATCTGAAGAAAGCAGAATTTAACAAAGATCCTCTACCATCTAAGTATAGACTACATGAAACATTCTTCAAACCAATTCTTAGTTGTGAGCCATCAATATCAACACATAAACTCCACCCTGATGACCAATTTCTCATATTTGCTTCTGATGGTTTATGGGAACATCTTACCAACCAAGAGGTTGTTAACATAGTCACCAATAACCCACCTAATGGAATTGCTAAGAGACTTGTGAAAGCTGCACTTAGAGAAGCTGCTAAGAAGAGAGAAATGAGATTTGCAGACCTCCAAAAGATTGAACAAGGAGTAAGGAGACACTTCCATGATGATATAACAGTAATTGTTGTGTATCTAAATCCAAGACTGAGTGATAATAACAATTGTTCTCACTCGGGTTCTCCACTCTCAGTTAAGGGAGGTGATCCAGCTTATAGTTACTAG 1122 0.3913 MVRSCWKPSVEGDDGDESGRVDGLLWYKDFGNHLYGEFSMAVIQANSSLEDRGQLESGPLSSNHLGPQGTFIGVYDGHGGTEASQFVSDNLFCNLKRLTSEHQGMSENVIKKAYSATDEGFLSLVKKHWLNKPHIASTGTCCLVGIICNDMLYIANSGDSRAVLGRVERATKETSAIQLSTEHNVNQETMRDEIRSKHPYDSQIVVMRHNVWRVKGLIQVSRSIGDAYLKKAEFNKDPLPSKYRLHETFFKPILSCEPSISTHKLHPDDQFLIFASDGLWEHLTNQEVVNIVTNNPPNGIAKRLVKAALREAAKKREMRFADLQKIEQGVRRHFHDDITVIVVYLNPRLSDNNNCSHSGSPLSVKGGDPAYSY* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1399 373 Gene3D - 28 355 IPR036457 -
Lan11g1399 373 SUPERFAMILY PP2C-like 46 347 IPR036457 -
Lan11g1399 373 Pfam Protein phosphatase 2C 58 314 IPR001932 -
Lan11g1399 373 PANTHER SERINE/THREONINE PHOSPHATASE FAMILY, 2C DOMAIN PROTEIN 3 369 - -
Lan11g1399 373 PANTHER ALPHABET, ISOFORM E-RELATED 3 369 - -
Lan11g1399 373 ProSiteProfiles PPM-type phosphatase domain profile. 34 345 IPR001932 -
Lan11g1399 373 CDD PP2Cc 35 345 IPR001932 -
Lan11g1399 373 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169
Lan11g1399 373 SMART PP2C_4 31 343 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1399 Lan-Chr11 22173316 22177484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1399 1 367 PP2C-type Phosphatase Gene Family AT3G12620 64.960 5.31e-179 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1399 K01102 - gmx:100819870 630.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1399 11 22173316 22177484 Lan20g1037 20 11294622 11298295 LSH
Lan11g1399 11 22173316 22177484 Lan4g1640 4 25285905 25289707 LSH
Lan9g0440 9 6690567 6693988 Lan11g1399 11 22173316 22177484 PCT
Lan11g1399 11 22173316 22177484 Lan9g0440 9 6690567 6693988 PCT