Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1388 ATGATGAAGAGAATGAGAGAAAATGAAGAAAAAGAAAGCATAGCTTTGGCAAATAATCTGATTCTATTAACAAAGTCATTGAATAATAGTTACCCTTCATTGGAGTTTGAGTGCAAGACATGCAACCGCAAGTTCTCATCATTTCAAGCCTTGGGTGGCCACAGTGCTAGCCACAAGAAACAAAAACTCAATGTAGATCAAGAATTGATGAAACAAGAAACCATGAAGCCCAAAATGCATGAGTGCACCATTTGTGGTCAAGAATTCACTATGGGGCAAGCTTTGGGAGGACACATGAGAAGACACAGAAGTGCTACTACTAATGAAAAAGGGTTTAGTTCTATTAAGCATGATGTTGTAAAGGTTCCAGTTCTGAAAAGATCTAATAGTAAGAGGGTTATGTGCTTGGATTTGGATTTGAACTTGACACCATTGGAAAATGACTTGAAGTTGTTGTTTGGAAATAAGGCACCTCAAGTTGATCTTTCTTTGTTTTGA 498 0.3735 MMKRMRENEEKESIALANNLILLTKSLNNSYPSLEFECKTCNRKFSSFQALGGHSASHKKQKLNVDQELMKQETMKPKMHECTICGQEFTMGQALGGHMRRHRSATTNEKGFSSIKHDVVKVPVLKRSNSKRVMCLDLDLNLTPLENDLKLLFGNKAPQVDLSLF* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1388 165 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Lan11g1388 165 Gene3D Classic Zinc Finger 34 102 - -
Lan11g1388 165 Pfam C2H2-type zinc finger 80 104 - -
Lan11g1388 165 Pfam C2H2-type zinc finger 36 61 - -
Lan11g1388 165 SUPERFAMILY beta-beta-alpha zinc fingers 36 102 IPR036236 -
Lan11g1388 165 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Lan11g1388 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Lan11g1388 165 PANTHER ZINC FINGER PROTEIN ZAT5 2 159 - -
Lan11g1388 165 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 2 159 - -
Lan11g1388 165 SMART c2h2final6 80 102 IPR013087 -
Lan11g1388 165 SMART c2h2final6 36 58 IPR013087 -
Lan11g1388 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1388 Lan-Chr11 21475215 21475894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1388 2 164 C2H2 Transcription Factor Family AT3G53600 47.753 9.06e-46 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan11g1388 zf-C2H2_6 6e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1388 - - lang:109338093 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1388 11 21475215 21475894 Lan20g0297 20 2021621 2022421 LSH
Lan11g1388 11 21475215 21475894 Lan4g1589 4 24935307 24935946 LSH