Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1377 ATGGCGGCGGCACGGCGGCTCCGTGACCTCCAATCCCAACCCGGCAACAAAATCTGCGTCGACTGCTCCCAAAAGAACCCGCAATGGGCCTCCGTCTCCTACGGCATCTTCATGTGCCTCGAGTGCTCCGGCAAGCACCGCGGCCTCGGCGTCCACATCTCTTTCGTCCGATCCGTCACCATGGATTCCTGGTCCGAAATCCAGATCAAGAAAATGGAAGCTGGCGGCAACGACAAATTGAACACGTTCTTCACTCGTTACGAAATCCCGAAGGAAACTGATATTGTTACTAAGTACAACACCAAAGCTTCTTCTGTATATAGGGATCGAATCCAAGCCATAGCTGAAGAACGCGCTTGGCGTGATCCACCTGTGGTTAAGGAGAGTCTCAAGGGAAATCAGAGCGGCGGCGGTGGCGGAGGAGGAAGTCGTAGGAATAACGGAGGGTGGGATGATGATTGGGGTAATGATGATGGTTTCGGGAATTCTGGTGAATTTAGGCGTAACCACTCGACCGGGGAGTTCAGAAGCGGTGGTGGTGGTGGTGCGGCGCCGATGAGGTCGAGGTCCACGACAGATTTCACGCGAACGGAATTGCAGGCTTCGGCGGCGAATAAGGAGAGCTTTTTCGCGAAGAAGATTGCGGAGAATGAATCGAGACCTGAGGGGCTTCCACCATCGAAGGGTGGGAAGTATGTTGGGTTTGGATCGAGTCCTGCACCTTCTTCCCAGAGGAGCAATCCGCAAAATGATTATTTTTCTGTTGTTTCTCAGGGGATTGGTAAATTGTCCTTGGTTGCTGCATCTGCAGCTCAAGAGATCACTACTAAGGTCAAGGAAGGTGGTTATGATGACAAGGTCAATGAAACTGTCAATGTTGTCTCTCAAAAGACGTCAGAGATTGGACAAAGGACATGGGGCATCATGAAAGGGGTCTTGGCTATGGCTTCACAGAAGGTTGAGGAGTTGGCTGGAGATGGTCCAAATTCGAAGACTGATAACTGGCAGCAAAATGAGAATAATAGAAATGGTTCCTCTCAGGATTTCAATCAAGAGAATAAAGGCTGGAACTCTTCGATGGGAAGAGAACAATCTTCATCATGGCAATCTAAAACTCATAGCGCAAGCTCTTTGGATGAGTGGGGCAACAAAGATAGTAGGAAGGAAGAACCAGCTAAAGGATCGACTCTTTCGTCAAGTGGGCAGTTCAATTCTTCCAACTCAAGCTCTTGGGATGATTGGGACCACAAAGATTCTAAGAAGGAAGAACCAGCTAAAGGATCGGCTCTCAATAGCAGTGATGGTTGGGCTGGCTGGGACGATGCCAAAGATGATGGATTTGATGATGTTCCATCTCATAAGAAAGGTGCTGGTGACGGAAAATCACAATCAACCTGGACAGGGGGTGGCTTTCTCTAA 1419 0.4954 MAAARRLRDLQSQPGNKICVDCSQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDKLNTFFTRYEIPKETDIVTKYNTKASSVYRDRIQAIAEERAWRDPPVVKESLKGNQSGGGGGGGSRRNNGGWDDDWGNDDGFGNSGEFRRNHSTGEFRSGGGGGAAPMRSRSTTDFTRTELQASAANKESFFAKKIAENESRPEGLPPSKGGKYVGFGSSPAPSSQRSNPQNDYFSVVSQGIGKLSLVAASAAQEITTKVKEGGYDDKVNETVNVVSQKTSEIGQRTWGIMKGVLAMASQKVEELAGDGPNSKTDNWQQNENNRNGSSQDFNQENKGWNSSMGREQSSSWQSKTHSASSLDEWGNKDSRKEEPAKGSTLSSSGQFNSSNSSSWDDWDHKDSKKEEPAKGSALNSSDGWAGWDDAKDDGFDDVPSHKKGAGDGKSQSTWTGGGFL* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1377 472 MobiDBLite consensus disorder prediction 329 377 - -
Lan11g1377 472 SMART arf_gap_3 4 129 IPR001164 GO:0005096
Lan11g1377 472 SUPERFAMILY ArfGap/RecO-like zinc finger 5 113 IPR037278 -
Lan11g1377 472 MobiDBLite consensus disorder prediction 458 472 - -
Lan11g1377 472 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Lan11g1377 472 CDD ArfGap_ArfGap1 3 116 - -
Lan11g1377 472 MobiDBLite consensus disorder prediction 378 392 - -
Lan11g1377 472 MobiDBLite consensus disorder prediction 122 194 - -
Lan11g1377 472 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 397 - -
Lan11g1377 472 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 397 472 - -
Lan11g1377 472 MobiDBLite consensus disorder prediction 213 250 - -
Lan11g1377 472 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 397 IPR044519 GO:0005096|GO:0016192
Lan11g1377 472 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 397 472 IPR044519 GO:0005096|GO:0016192
Lan11g1377 472 MobiDBLite consensus disorder prediction 323 472 - -
Lan11g1377 472 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Lan11g1377 472 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Lan11g1377 472 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Lan11g1377 472 MobiDBLite consensus disorder prediction 411 427 - -
Lan11g1377 472 MobiDBLite consensus disorder prediction 438 456 - -
Lan11g1377 472 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Lan11g1377 472 MobiDBLite consensus disorder prediction 393 410 - -
Lan11g1377 472 Pfam Putative GTPase activating protein for Arf 5 114 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1377 Lan-Chr11 21148937 21153971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1377 5 87 C2H2 Transcription Factor Family AT4G05330 48.810 2.27e-23 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1377 K12492 - gmx:100806519 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1377 11 21148937 21153971 Lan20g1020 20 10945986 10951227 LSH
Lan19g0477 19 6924325 6928636 Lan11g1377 11 21148937 21153971 PCT
Lan11g1377 11 21148937 21153971 Lan19g0477 19 6924325 6928636 PCT