Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1372 ATGAATCACTGTGTTCCAGATTTCGATATTCAAATGGATGATGAAGAAGACTACCAAATATCTCACCCAAACAAACCTTCTATGCAAAACGACGAGATCATGGAACTGTTATGGCAAAACGGCCAGGTCGTGATGCAAAGACAAAACCAACGACAGATCAGAAAACTTACGCCGGCGGCGGCGGCGGAAAGCACCGGTGACGTGATCGCGGAGGGTTCTTCATCGGCGAGGGAGATTCGATCTTCAGACGGTGAAGAGAATTTCCACAGCCAAAACTTGTTCATGCAAGAAGATGAAATGGCTTCGTGGCTTCACTATTCGATCCACGATGAAGATCCGGCTCCGTTGGATCATCACAATTTCTGCACGGGTATACTCTACGCTTCGCCGAATCAGAACGGTGCAGTGGATACCGTTGTAAATATGGCGGAGATCCAACAACCGCCTGTAACGGTAGCTTCACGGCCACCGATCCCGCCGCCAAGGATACAGAACTTCTCGCACTTTTCTAAGCACAACATGACGAGGGTGGAGCCGGCGTTGATTTCTAAGGCCGCGGATGCAAGGGAATCGACGGTTGTAGATTCGTGTGATACGGTGGCAGCGGGTTCTAGGATGTCGGAGAATGTGAGGAGCTCAGCGGAGCACGCGGAAACTGGGCGTGGGAGCATGATCGCCGCCGGGAAAGCGCCCGCAACTTCCGGCGGAGGGGAGACGGGGACGTGCGATATGACAGTGACGTCATCTCAGGGCGGTTCGAGCGGAAGTGCTGAACCGGGACAGAGGGAACCAGCGTTGGACCGGAAGCGGAAGGGCCGGGAACTAGAGGAATCGGACTTTCAGAGCGAGGATGTTGATTTTGAATCTCCAGAAGCAAAAAAACAAGTCCGTGGTTCTACATCTACAAAGAAATCCCGTGCAGCTGAGGTCCATAATCTTTCAGAGAGGAGGCGTCGAGATAGAATTAATGAAAAGATGAGAGCTTTGCAAGAACTTATACCTCGATGCAACAAGTCTGACAAAGCTTCAATGCTGGACGAAGCAATCGAATACTTGAAGTCACTGCAGCTTCAAGTACAGATGATGTCCATGGGATGTGGTATGGTACCTATGATGTTTCCGGGAATCCAGCAGTATATGCCCCCAATGGGAATGGGGATTGGAATGGGTATGGGCATGGAAATGGGAATGAACAGACCCGTAATGCCATTTCCTAATATGTTAGTTAATTCAGCTTTGCCATCAGCGAATGCAGCTGCACATTTGGGACCAAGGTTCCCTATGCCTCCTTTCCATATGCCCCATGTTCCTGCGCCTGAATCATCCAGAATGCAAGCACCAAATCAGTCAGATAATATGCTTCCCTCAGTTGGTAGTGCACCAGACTCAGATCAATCACGTATCCCGAACTTCGGTGATCCTTATCAGCAATATCTGCAGTTACAATTAATGCAGAATCAGGCAATGAACCAACAAAATGTCAGCAAGCCAAGTACCAGTAGGGACCAAGAGAATCCAGAAAAGCATCACTCAGAAGAAAGATGA 1545 0.4945 MNHCVPDFDIQMDDEEDYQISHPNKPSMQNDEIMELLWQNGQVVMQRQNQRQIRKLTPAAAAESTGDVIAEGSSSAREIRSSDGEENFHSQNLFMQEDEMASWLHYSIHDEDPAPLDHHNFCTGILYASPNQNGAVDTVVNMAEIQQPPVTVASRPPIPPPRIQNFSHFSKHNMTRVEPALISKAADARESTVVDSCDTVAAGSRMSENVRSSAEHAETGRGSMIAAGKAPATSGGGETGTCDMTVTSSQGGSSGSAEPGQREPALDRKRKGRELEESDFQSEDVDFESPEAKKQVRGSTSTKKSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPPMGMGIGMGMGMEMGMNRPVMPFPNMLVNSALPSANAAAHLGPRFPMPPFHMPHVPAPESSRMQAPNQSDNMLPSVGSAPDSDQSRIPNFGDPYQQYLQLQLMQNQAMNQQNVSKPSTSRDQENPEKHHSEER* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1372 514 MobiDBLite consensus disorder prediction 64 85 - -
Lan11g1372 514 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 512 IPR031066 -
Lan11g1372 514 MobiDBLite consensus disorder prediction 203 314 - -
Lan11g1372 514 MobiDBLite consensus disorder prediction 442 500 - -
Lan11g1372 514 MobiDBLite consensus disorder prediction 431 514 - -
Lan11g1372 514 MobiDBLite consensus disorder prediction 238 257 - -
Lan11g1372 514 MobiDBLite consensus disorder prediction 262 278 - -
Lan11g1372 514 Pfam Helix-loop-helix DNA-binding domain 310 356 IPR011598 GO:0046983
Lan11g1372 514 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 512 - -
Lan11g1372 514 CDD bHLH_AtPIF_like 306 369 - -
Lan11g1372 514 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 306 355 IPR011598 GO:0046983
Lan11g1372 514 SMART finulus 312 361 IPR011598 GO:0046983
Lan11g1372 514 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 304 372 IPR036638 GO:0046983
Lan11g1372 514 Gene3D - 301 364 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1372 Lan-Chr11 21058568 21065480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1372 1 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.953 1.14e-64 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan11g1372 HLH 1.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1372 - - gmx:100788491 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0465 9 6954791 6960221 Lan11g1372 11 21058568 21065480 PCT
Lan5g1221 5 26068056 26073777 Lan11g1372 11 21058568 21065480 PCT
Lan11g1372 11 21058568 21065480 Lan9g0465 9 6954791 6960221 PCT
Lan11g1372 11 21058568 21065480 Lan5g1221 5 26068056 26073777 PCT