Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1348 ATGGGTCTTAGAGACATTGGTGCTTCACTTCCTCCTGGGTTTCGGTTTTATCCAAGTGATGAGGAATTGGTCCTTCATTACCTTTACAAAAAGATCACAAATGAGGAAGCTATGAAGGGTACCTTGGTGGAAATTGATTTACACACATGTGAACCATGGCAGCTTACTGAAGTGGCTAAGCTCAATGCAACAGAATGGTATTTCTTCAGCTTCCGTGACCGTAAATATGCAACTGGCTTTAGGACCAATCGCGCAACGACATCTGGATACTGGAAAGCAACAGGGAAAGATCGTACGGTGTTGGACTCAACCACGTGTGAGATTGTAGGGATGAGAAAAACATTGGTGTTCTACAGAAACAGAGCTCCAAATGGCATTAAATCTGGTTGGATTATGCATGAGTTTCGCTTGGAGACTCCACATATGCCCCCTAAGGAGGATTGGGTTTTGTGTAGAGTCTTTCACAAAGGAAAAGAAGACAACAATGCCAAACATAGCCCACAACTCATGTTTGATTCCACAACCCCATCCCTAACTTTGGTTTCATCACCTTCAACCAACCAAACCATCCCTGTTGGGTATAACAACCTTGCCCATTTCTCTTCATCATCGCCAAATAATCTTAATCATCATCATCCGAACCTTAACCAAAACAATTCTTTGATGAATATTCTTAATTATTCTCGGGACACAAACACCAATTGTAGTACCGTTACTCAAAATACTCCCAAAGGTGATGATGGGTATGAGTTCTTATGGGACATCGATCTTGAAGAAAATAGCTTCCAAGATGGTGTGGCATCAAACTTGGATGGAATGAGATTCGAGGTTGATAATAATAGTATAGTTTTGCTATAG 858 0.4126 MGLRDIGASLPPGFRFYPSDEELVLHYLYKKITNEEAMKGTLVEIDLHTCEPWQLTEVAKLNATEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVLDSTTCEIVGMRKTLVFYRNRAPNGIKSGWIMHEFRLETPHMPPKEDWVLCRVFHKGKEDNNAKHSPQLMFDSTTPSLTLVSSPSTNQTIPVGYNNLAHFSSSSPNNLNHHHPNLNQNNSLMNILNYSRDTNTNCSTVTQNTPKGDDGYEFLWDIDLEENSFQDGVASNLDGMRFEVDNNSIVLL* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1348 285 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Lan11g1348 285 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Lan11g1348 285 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Lan11g1348 285 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 280 - -
Lan11g1348 285 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Lan11g1348 285 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1348 Lan-Chr11 20355083 20361612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1348 6 221 NAC Transcription Factor Family AT1G56010 48.035 8.91e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lan11g1348 NAM 8.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1348 - - ccaj:109788642 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1348 11 20355083 20361612 Lan20g0991 20 10553547 10558766 LSH