Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1309 ATGGATGAGAATCATGAGAATGACGCCCTTACAAACCCCAAACCTTCCACTGAACACGACATTGCTGATGAGCTAAATTTGAAAATGAAGAAGTATCTCAGAGGAAAAGTTAATGATTTGGGGGCTTTGAAAGATAAAAAGCTCAGGACTCAACTGACTATCAGAGAAGAATTATATGGAAAATCGGCGAAAGCTGCTGCCAAGGCCGAGAAGTGGCTTATGCCTAGTGAGGGAGGTTATCTAGAGCCTGAAGGCATAGAGAAGACATGGAGGATTAAACAAGATGCAATAGCTCGTGAAGTAGATATCAGAAGCTCAAGGAACCAATACGATATTGTATTACCAGATCTTGGTCCATACACCCTGGATTTTACTTCAAGTGGCCGGTATATGGCTATTGGTGGTCGTAAGGGTCATCTGGGAATTGTGGACATGATTAATCTGAGCCTAGTCAGAGAGCTTCAGGTAAGAGAAACAGTGCGTGATGTGGTATTCTTGCATAATGAGCTCTTTTTTGCGGCTGCCCAGAAAAAGTATCTTTACATCTATAATCGTGAAGGAACAGAACTTCACTGCCTCAAGGAACATGGTGCAGTGTTAAGGCTTCAGTTTCTGGAAAATCATTTTCTCTTGGCTTCAGTCAACAAATTTGGGCAGCTTCATTATCAGGATGTTACAATGGGTGCCATGGTTGGCAATTTTCGAACTGGCTTAGGACGTACGAATGTGATGCAAGTGAACCCCTTTAATGGGGTTGTTGGTCTGGGTCACTCAAGTGGTACAGTTACAATGTGGAAGCCAACCAGTTCTGCTCCTCTTGTCAAGATGCTATGTCATCGTGGACCTGTTTCAGCGCTGGCATTTCACTCAAATGGCCAATTAATGGCCACAGCCGGGCAAGATAAAAAAGTTAAAATTTGGGACTTGAGGAAATTTGAGGTTCTTCAGACATTACCCGGCCATGCAAGTAGTTTGGATTTCAGTCAAAAAGGCTTGCTTGCTTGCAGTAACGGTTCATTTATACAGGTTCTGAGTGATGCTTCTGGTACACACAACTATTCTAAGTATATGACTCATTCCATGGTGAAAGGATACCAAATAGGAAAATTAGCGTTTCGACCATACGAAGATGTTTTAGGCATAGGGCATTCCCAGGGATGGTCTAGTATTCTTATCCCAGGAGCTGGAGAACCCAACTTTGACTCATGGGTTGCAAATCCATTTGAAACATCTAAACAAAGAAGAGAAAAGGAAATAAGGTCTCTTCTTGATAAGCTTCCACCAGAGACTATCATGCTGGATCCGAGCAAGATCGGGACAGTGCAAACAACTAAAAAGGAGAAGAAAACAAAACAAGAGAGAGAATCTGAGATGGAAGCTGCTGTTGAAGATGTTAAGGGCAGAAAAATGAAGAACAAAACAAAAGGAAGAAATAAGCCAGGAAGAGTGGCACACAAAAAGCAGGAGGCACTTGCTAAAGTGAAGAGGCCTTACATAGAGCAGAAAGTTCAAGAGGAAGAAAACGTATCAAACAAGAAGCAGAAAACTAGTGAGGGAGTTGAACTACCAAAATCATTACAGAGATTTGCTCGAAAAAAGGCCTCGTCATGA 1611 0.4221 MDENHENDALTNPKPSTEHDIADELNLKMKKYLRGKVNDLGALKDKKLRTQLTIREELYGKSAKAAAKAEKWLMPSEGGYLEPEGIEKTWRIKQDAIAREVDIRSSRNQYDIVLPDLGPYTLDFTSSGRYMAIGGRKGHLGIVDMINLSLVRELQVRETVRDVVFLHNELFFAAAQKKYLYIYNREGTELHCLKEHGAVLRLQFLENHFLLASVNKFGQLHYQDVTMGAMVGNFRTGLGRTNVMQVNPFNGVVGLGHSSGTVTMWKPTSSAPLVKMLCHRGPVSALAFHSNGQLMATAGQDKKVKIWDLRKFEVLQTLPGHASSLDFSQKGLLACSNGSFIQVLSDASGTHNYSKYMTHSMVKGYQIGKLAFRPYEDVLGIGHSQGWSSILIPGAGEPNFDSWVANPFETSKQRREKEIRSLLDKLPPETIMLDPSKIGTVQTTKKEKKTKQERESEMEAAVEDVKGRKMKNKTKGRNKPGRVAHKKQEALAKVKRPYIEQKVQEEENVSNKKQKTSEGVELPKSLQRFARKKASS* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1309 536 MobiDBLite consensus disorder prediction 483 519 - -
Lan11g1309 536 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 310 - -
Lan11g1309 536 PANTHER WD-REPEAT PROTEIN BING4 11 532 IPR040315 -
Lan11g1309 536 PANTHER BNAANNG36350D PROTEIN 11 532 - -
Lan11g1309 536 SUPERFAMILY WD40 repeat-like 116 386 IPR036322 GO:0005515
Lan11g1309 536 MobiDBLite consensus disorder prediction 441 536 - -
Lan11g1309 536 Gene3D - 243 391 IPR015943 GO:0005515
Lan11g1309 536 Pfam WD domain, G-beta repeat 278 308 IPR001680 GO:0005515
Lan11g1309 536 MobiDBLite consensus disorder prediction 441 470 - -
Lan11g1309 536 SMART WD40_4 269 308 IPR001680 GO:0005515
Lan11g1309 536 SMART WD40_4 147 184 IPR001680 GO:0005515
Lan11g1309 536 SMART WD40_4 311 345 IPR001680 GO:0005515
Lan11g1309 536 SMART WD40_4 105 144 IPR001680 GO:0005515
Lan11g1309 536 SMART WD40_4 227 266 IPR001680 GO:0005515
Lan11g1309 536 ProSitePatterns Trp-Asp (WD) repeats signature. 295 309 IPR019775 -
Lan11g1309 536 Gene3D - 92 242 IPR015943 GO:0005515
Lan11g1309 536 SMART BING4CT_2 355 435 IPR012952 -
Lan11g1309 536 Pfam BING4CT (NUC141) domain 356 434 IPR012952 -
Lan11g1309 536 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 317 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1309 118 348 U-box Gene Family AT2G33340 25.926 3.30e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1309 K14768 - gmx:100802940 896.345