Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1302 ATGGGTCGTGAAACCCTTCTCTTACCATCCCCACCAACCCCGTCCACTGCCACCACCGCCGTCCCTCCTCCACTGCTTTCATCAGCATCAGGTTCAACAGCCCTTGTAGTCGTAGGCTCTGCTTCATCGGTACCTTCTCCTACTTCTCTTGCTCCTGGTTTCAGGTTCCACCCTACTGATGAAGAGCTTGTTATTTATTATCTTAAGCGCAAGGTTGGTGGAAAATGCTTCCGATTTGATGCAATATCAGAGGTTGATATTTATCGGAGTGAACCTTGGGACCTTGCAGATAAATCAAGGTTGAAGACAAGGGACCAGGAATGGTATTTCTTCAGTGCATTGGACAAGAAATATGGGAATGGGGGCAGAATGAATAGAGCTACAAACAAAGGGTATTGGAAAGCCACCGGGAATGACCGTCCAGTTAGGCATGAACAAAGGACTGTGGGGTTGAAGAAAACTTTGGTGTTTCATAGCGGTCGTGCTCCCGATGGCAAGAGGACCAATTGGGTCATGCATGAGTATAGACTTGTTGATGAAGAGCTCGAGAAAGCTAGGACTGTAAATGGTTCCTCTCAGGATGCATTTGTTTTGTGTAGAGTATTTCACAAGAATAACATAGGACCTCCAAATGGACAAAGATATGCACCTTTCGTTGAAGAAGAGTGGGATGATGAGTCAGGACTAGTTCCTGGGGCAGAGTCTGTGGAACCTATTTCTGTTGCTAAACAACCTTGCGTCAATGGCAATGGCCGTGTTTCATGTATTGAAGGGAGAAAAGATGTTGTGCAGGACAATCAATCTATTATCAAGGCCCCATTCGATGTCAACAAGCTTCCTATAGAGACTCAAAATCTTCTGACTGTTTGCAAGAGGGAGAGTATGACTGAGTTCCCATCACCGAAAAAGGAGGACTCTAAGCCTATGCAGGATGATTTTCCTTCACCCCAATCAGATAATCACAAGCCTTTCTCTCAAATATACAAAAGAAGGCGATATAACTTGAACAACCAGTTGAATGTTTCCGGAGAATCAATCCGAACCAGCCAGGATCCATGCTCGTCAACAATAACTACAGCTGCAACCACACTCCCGACGGCAACCGCCATCACCAACCCCACAACTACCAACTCTGCGCCGAAAAAACATTTTCTGTCTGCATTGGTGGAGTTTTCTCTGATGGAATCTCTTGAATCAAAGGAGGTTCAACCACCAGATTTTGATGCTGATAATCTTGAGTCAACTGTGTCTCCTAGCTGTTTGAAATTCATCAAACACTTGCAGAGTGAGATGCAGAAGCTTTCTATTGAAAGGGAGGCTATGCGGTTCGAGATGATGAGCGCTCAAGCGATGATTAACATTCTCCAGTCTCGTGTCGACCACCTGAACAAAGAAAACGAGGAATTGAAGATGGCCCGCAACCGTTAG 1428 0.4545 MGRETLLLPSPPTPSTATTAVPPPLLSSASGSTALVVVGSASSVPSPTSLAPGFRFHPTDEELVIYYLKRKVGGKCFRFDAISEVDIYRSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATNKGYWKATGNDRPVRHEQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVDEELEKARTVNGSSQDAFVLCRVFHKNNIGPPNGQRYAPFVEEEWDDESGLVPGAESVEPISVAKQPCVNGNGRVSCIEGRKDVVQDNQSIIKAPFDVNKLPIETQNLLTVCKRESMTEFPSPKKEDSKPMQDDFPSPQSDNHKPFSQIYKRRRYNLNNQLNVSGESIRTSQDPCSSTITTAATTLPTATAITNPTTTNSAPKKHFLSALVEFSLMESLESKEVQPPDFDADNLESTVSPSCLKFIKHLQSEMQKLSIEREAMRFEMMSAQAMINILQSRVDHLNKENEELKMARNR* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1302 475 MobiDBLite consensus disorder prediction 296 310 - -
Lan11g1302 475 PANTHER NAC DOMAIN-CONTAINING PROTEIN 78-LIKE 42 471 - -
Lan11g1302 475 MobiDBLite consensus disorder prediction 1 21 - -
Lan11g1302 475 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 42 471 - -
Lan11g1302 475 MobiDBLite consensus disorder prediction 296 323 - -
Lan11g1302 475 Gene3D NAC domain 59 207 IPR036093 GO:0003677|GO:0006355
Lan11g1302 475 Coils Coil 424 475 - -
Lan11g1302 475 SUPERFAMILY NAC domain 47 205 IPR036093 GO:0003677|GO:0006355
Lan11g1302 475 Pfam No apical meristem (NAM) protein 52 177 IPR003441 GO:0003677|GO:0006355
Lan11g1302 475 ProSiteProfiles NAC domain profile. 50 204 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1302 Lan-Chr11 19195675 19200598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1302 1 470 NAC Transcription Factor Family AT3G10480 42.657 1.00e-115 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lan11g1302 NAM 4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1302 - - gmx:100808783 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1302 11 19195675 19200598 Lan20g0911 20 8686619 8692630 LSH
Lan11g1302 11 19195675 19200598 Lan4g1174 4 18813187 18818219 LSH