Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lan11g1301 | ATGGAAGCACCGGAGGATGTCTCTTTGGGTGGGTCCAAAGAGCAAAACAACATTGTTAAAGGAAAAAGAACCAAAAGGGTAAGGCCACAATCCCCTATTCCTTTCTCCATCACTGCTATTTCTTCCACTGCAGAAAAAGAAGATTGCTACAATGTTGACAACAACAACAACAACAACAAAGATTTTAATAATAACAATAACAACAGCACCCATGCAACTTCTTCTGCAGGGTTACAAGACAGCACTGATGAAGAAGAGGATATGGCCAATTGCCTGATCCTTCTAGCACAAGGACAACCCCGGGAATCGCCGAAACACGCCGCGGCTTGCGGTGGCGAAGACTTGACCAGAGGAATGAACTATAGTAAGTACAGCAGTAGAAAATTCTTGGAAGCAGCTGGAATAGGAGGGTCTGCAAGAGCAGGGTATTATGTATATGAATGCAAGACATGTAATAGAACATTCCCTTCATTTCAAGCACTTGGAGGCCATAGGGCTAGTCACAAGAAGCCTAAGGCCATAGCTTCTGCTGCAATAGCCATTGGCACACAAGAAAAAAAACAAGAGGAAGAGTTCCAATTCAAGACCAATAACAATGCATCATTTTCTCTTCAATTGAATGGAAGAGGGAATTTGTATAGCAATGAAAATATTAAGTCCAAGGTGCATGAATGCTCCATTTGTGGCGCTGAATTCACATCAGGACAAGCATTGGGTGGCCATATGAGACGGCATCGTGCACCGGTTGGGACTAATACTACACTCTCTTTGACACCATCGGCTTTGGAACCAGAAGAAGGTCATCCACCTAGAAAAAGAAGGAATGTGCTGTCTTTGGATTTGGATCTTAACCTTCCTGCACCAGAACCAGAACATGATCCTAGAGAACCCAACTTTGCCTTGGCATCTAAGCAACAACAAAGACAAACACCACCACAACAACAACAAAGACAAACACCACCACCACAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATCTAGTATTGTCTTTTCCACCCCAGCTTTGGTGGATTGTCATTATTAA | 1068 | 0.4401 | MEAPEDVSLGGSKEQNNIVKGKRTKRVRPQSPIPFSITAISSTAEKEDCYNVDNNNNNNKDFNNNNNNSTHATSSAGLQDSTDEEEDMANCLILLAQGQPRESPKHAAACGGEDLTRGMNYSKYSSRKFLEAAGIGGSARAGYYVYECKTCNRTFPSFQALGGHRASHKKPKAIASAAIAIGTQEKKQEEEFQFKTNNNASFSLQLNGRGNLYSNENIKSKVHECSICGAEFTSGQALGGHMRRHRAPVGTNTTLSLTPSALEPEEGHPPRKRRNVLSLDLDLNLPAPEPEHDPREPNFALASKQQQRQTPPQQQQRQTPPPQQQQQQQQQQQQQQQQQQSSIVFSTPALVDCHY* | 356 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lan11g1301 | 355 | Gene3D | Classic Zinc Finger | 144 | 245 | - | - | |
Lan11g1301 | 355 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 146 | 173 | IPR013087 | - | |
Lan11g1301 | 355 | SUPERFAMILY | beta-beta-alpha zinc fingers | 145 | 245 | IPR036236 | - | |
Lan11g1301 | 355 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 321 | 355 | - | - | |
Lan11g1301 | 355 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 12 | 320 | - | - | |
Lan11g1301 | 355 | Pfam | C2H2-type zinc finger | 222 | 248 | - | - | |
Lan11g1301 | 355 | Pfam | C2H2-type zinc finger | 145 | 171 | - | - | |
Lan11g1301 | 355 | PANTHER | C2H2-TYPE ZINC FINGER PROTEIN | 12 | 320 | - | - | |
Lan11g1301 | 355 | PANTHER | C2H2-TYPE ZINC FINGER PROTEIN | 321 | 355 | - | - | |
Lan11g1301 | 355 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 148 | 168 | IPR013087 | - | |
Lan11g1301 | 355 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 223 | 245 | IPR013087 | - | |
Lan11g1301 | 355 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 225 | 245 | IPR013087 | - | |
Lan11g1301 | 355 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Lan11g1301 | 355 | MobiDBLite | consensus disorder prediction | 300 | 347 | - | - | |
Lan11g1301 | 355 | MobiDBLite | consensus disorder prediction | 51 | 79 | - | - | |
Lan11g1301 | 355 | SMART | c2h2final6 | 146 | 168 | IPR013087 | - | |
Lan11g1301 | 355 | SMART | c2h2final6 | 223 | 245 | IPR013087 | - | |
Lan11g1301 | 355 | MobiDBLite | consensus disorder prediction | 237 | 355 | - | - | |
Lan11g1301 | 355 | MobiDBLite | consensus disorder prediction | 51 | 83 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lan11g1301 | Lan-Chr11 | 19190005 | 19191620 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lan11g1301 | 1 | 355 | C2H2 Transcription Factor Family | AT5G04390 | 42.040 | 1.06e-77 | 241 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Lan11g1301 | zf-C2H2_6 | 7.1e-13 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lan11g1301 | - | - | gmx:100799383 | 385.956 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lan11g1301 | 11 | 19190005 | 19191620 | Lan20g0909 | 20 | 8658943 | 8660412 | LSH | |
Lan11g1301 | 11 | 19190005 | 19191620 | Lan4g1180 | 4 | 18895441 | 18897011 | LSH |