Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1301 ATGGAAGCACCGGAGGATGTCTCTTTGGGTGGGTCCAAAGAGCAAAACAACATTGTTAAAGGAAAAAGAACCAAAAGGGTAAGGCCACAATCCCCTATTCCTTTCTCCATCACTGCTATTTCTTCCACTGCAGAAAAAGAAGATTGCTACAATGTTGACAACAACAACAACAACAACAAAGATTTTAATAATAACAATAACAACAGCACCCATGCAACTTCTTCTGCAGGGTTACAAGACAGCACTGATGAAGAAGAGGATATGGCCAATTGCCTGATCCTTCTAGCACAAGGACAACCCCGGGAATCGCCGAAACACGCCGCGGCTTGCGGTGGCGAAGACTTGACCAGAGGAATGAACTATAGTAAGTACAGCAGTAGAAAATTCTTGGAAGCAGCTGGAATAGGAGGGTCTGCAAGAGCAGGGTATTATGTATATGAATGCAAGACATGTAATAGAACATTCCCTTCATTTCAAGCACTTGGAGGCCATAGGGCTAGTCACAAGAAGCCTAAGGCCATAGCTTCTGCTGCAATAGCCATTGGCACACAAGAAAAAAAACAAGAGGAAGAGTTCCAATTCAAGACCAATAACAATGCATCATTTTCTCTTCAATTGAATGGAAGAGGGAATTTGTATAGCAATGAAAATATTAAGTCCAAGGTGCATGAATGCTCCATTTGTGGCGCTGAATTCACATCAGGACAAGCATTGGGTGGCCATATGAGACGGCATCGTGCACCGGTTGGGACTAATACTACACTCTCTTTGACACCATCGGCTTTGGAACCAGAAGAAGGTCATCCACCTAGAAAAAGAAGGAATGTGCTGTCTTTGGATTTGGATCTTAACCTTCCTGCACCAGAACCAGAACATGATCCTAGAGAACCCAACTTTGCCTTGGCATCTAAGCAACAACAAAGACAAACACCACCACAACAACAACAAAGACAAACACCACCACCACAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATCTAGTATTGTCTTTTCCACCCCAGCTTTGGTGGATTGTCATTATTAA 1068 0.4401 MEAPEDVSLGGSKEQNNIVKGKRTKRVRPQSPIPFSITAISSTAEKEDCYNVDNNNNNNKDFNNNNNNSTHATSSAGLQDSTDEEEDMANCLILLAQGQPRESPKHAAACGGEDLTRGMNYSKYSSRKFLEAAGIGGSARAGYYVYECKTCNRTFPSFQALGGHRASHKKPKAIASAAIAIGTQEKKQEEEFQFKTNNNASFSLQLNGRGNLYSNENIKSKVHECSICGAEFTSGQALGGHMRRHRAPVGTNTTLSLTPSALEPEEGHPPRKRRNVLSLDLDLNLPAPEPEHDPREPNFALASKQQQRQTPPQQQQRQTPPPQQQQQQQQQQQQQQQQQQSSIVFSTPALVDCHY* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1301 355 Gene3D Classic Zinc Finger 144 245 - -
Lan11g1301 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 146 173 IPR013087 -
Lan11g1301 355 SUPERFAMILY beta-beta-alpha zinc fingers 145 245 IPR036236 -
Lan11g1301 355 PANTHER ZINC FINGER PROTEIN ZAT5 321 355 - -
Lan11g1301 355 PANTHER ZINC FINGER PROTEIN ZAT5 12 320 - -
Lan11g1301 355 Pfam C2H2-type zinc finger 222 248 - -
Lan11g1301 355 Pfam C2H2-type zinc finger 145 171 - -
Lan11g1301 355 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 12 320 - -
Lan11g1301 355 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 321 355 - -
Lan11g1301 355 ProSitePatterns Zinc finger C2H2 type domain signature. 148 168 IPR013087 -
Lan11g1301 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 223 245 IPR013087 -
Lan11g1301 355 ProSitePatterns Zinc finger C2H2 type domain signature. 225 245 IPR013087 -
Lan11g1301 355 MobiDBLite consensus disorder prediction 1 33 - -
Lan11g1301 355 MobiDBLite consensus disorder prediction 300 347 - -
Lan11g1301 355 MobiDBLite consensus disorder prediction 51 79 - -
Lan11g1301 355 SMART c2h2final6 146 168 IPR013087 -
Lan11g1301 355 SMART c2h2final6 223 245 IPR013087 -
Lan11g1301 355 MobiDBLite consensus disorder prediction 237 355 - -
Lan11g1301 355 MobiDBLite consensus disorder prediction 51 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1301 Lan-Chr11 19190005 19191620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1301 1 355 C2H2 Transcription Factor Family AT5G04390 42.040 1.06e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan11g1301 zf-C2H2_6 7.1e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1301 - - gmx:100799383 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1301 11 19190005 19191620 Lan20g0909 20 8658943 8660412 LSH
Lan11g1301 11 19190005 19191620 Lan4g1180 4 18895441 18897011 LSH