Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1255 ATGGAAGGAAACATGGGTTGGGAAATAATAGAAGAAATGGGTTGGAGAAAGGGACCTTGGACTTCTGAAGAGGACATGTTGCTCATTGATTATGTCAAACAACATGGTGAAGGTAGATGGAATTCTGTTGCTAGGTTTACAGGACTGCAAAGAAATGGGAAGAGCTGCAGATTGAGATGGGTGAATTACCTGAGACCAGACCTCAAGAGGGGTCAGATAACACCACAAGAAGAGAGCATAATTCTAGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAGCAATTGCAAGAAGCTTGCCAGGAAGAACTGATAATGAGATAAAGAATTACTGGAGAACTCATTTCAAGAAAAAGGCTAGAAATCCCTCTGATGCTGCTGAAAAGGCGAAAAATCGCCTCTTGAAGAAGCAGCTATTTCAACAACAACAGCAGTTGAAGCAGCATCAGGTTCAACAGCAGCAGCAACAACAACTGCAATTCAACTTGGACATGAAAGGGATCATGAACTTGCTTGATGAAAATGACCACATGGCACCTTCTATATCTCAAGAGACACAAGAAATAGTGAGCATGTACCCAAATACAACAACATATGAGGAGGGCTATTTCTACTCTATGCACAATGGAAATATATTTGCACCAACTTCTTCAAATGATGAAACTTTGTGGGATGGGCTTTGGAACTTGGATGATGTTCTTAACAATTTTAGTGCAGCTAGTGCTACAAGAAAAATCACTATGCACAATTTAGTTGCTCCTTATTGTTAA 768 0.4089 MEGNMGWEIIEEMGWRKGPWTSEEDMLLIDYVKQHGEGRWNSVARFTGLQRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWGNRWSAIARSLPGRTDNEIKNYWRTHFKKKARNPSDAAEKAKNRLLKKQLFQQQQQLKQHQVQQQQQQQLQFNLDMKGIMNLLDENDHMAPSISQETQEIVSMYPNTTTYEEGYFYSMHNGNIFAPTSSNDETLWDGLWNLDDVLNNFSAASATRKITMHNLVAPYC* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1255 255 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 246 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lan11g1255 255 ProSiteProfiles Myb-like domain profile. 16 64 IPR001005 -
Lan11g1255 255 Gene3D - 74 118 - -
Lan11g1255 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Lan11g1255 255 PANTHER MYB TRANSCRIPTION FACTOR 1 246 - -
Lan11g1255 255 Gene3D - 17 69 - -
Lan11g1255 255 CDD SANT 19 64 IPR001005 -
Lan11g1255 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 64 IPR017930 -
Lan11g1255 255 Coils Coil 131 151 - -
Lan11g1255 255 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Lan11g1255 255 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Lan11g1255 255 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Lan11g1255 255 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Lan11g1255 255 CDD SANT 74 115 IPR001005 -
Lan11g1255 255 SMART sant 69 117 IPR001005 -
Lan11g1255 255 SMART sant 16 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1255 Lan-Chr11 18460770 18462261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1255 9 255 MYB Transcription Factor Family AT4G13480 52.239 1.76e-85 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan11g1255 Myb_DNA-binding 7.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1255 K09422 - gmx:100782089 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1255 11 18460770 18462261 Lan20g0879 20 8320959 8322306 LSH