Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1245 ATGGATTCAGATGAAGGAAAGCTTTTCATCGGTGGAATTTCATGGGAAACTACTGAAGACAAGCTCAAAGAGCATTTCACCAATTACGGCGACGTTTTGAATGCTTCTGTTATGCGTGATAAGAACACTGGAAAACCTAGAGGATTTGCTTTCGTTGTTTTTTCAGATCCTGCTATTCTAGATAGGGTTCTTCAGGATAAACATGTTATTGATGGAAGAACGGTTGATGCCAAGAGGGCCCTCTCGAGAGAGGATCAACAAATTTCTGGCAATTCTAGAGCTGGAAATCCAAATTCTGCTTTGCATTCTGGAAATGGTGGAAATATGAAGACCAAAAAGATATTTGTTGGAGGGTTGCCTCCCACCCTGTCTGAAGAAAATTTCCGTCAGTACTTTGAGTCGTATGGCAATGTGACTGATGTCGTAGTCATGTACGACCAGAGTACTGGACGCCCACGAGGATTTGGGTTTATTTCTTTTGATACTGAGGATGCTGTTGAAAGGGTTTTGCACAAGACATTTCATGACTTAAATGGTAAGCAAGTAGAGGTAAAGCGTGCACTTCCCAAGGATGCCAATCCTGGTTCAGGTGGTCGAATGATGGGTGGTAGTTCTGGAGGCGGTGGCTATCAGGGGTATGGAGCATCTGGTGGCAACCAAAATGCGTACGATGGCCGTGTGGATTCTAGTAGGTATATGCAATCTCAAAGTAATGCTGGTGGATTCCCACCTTATGCTTCTTCTGGCTATAGCGCCCCTGGGTATGGGTATGGTCCTGCTAATAATGGCATGGGTTATGGTGCATATGGAAGTTATGGTGCTGCTGCTGCTGGGTATGGTGGACCCGCTGGTGCGACATATGGGAATCCAAATGTCCCTAATGCTGCCTATGCTGGTGGTCCCCCAGGTGGCCCAAGGAGTTCATGGCCTGCTCAGGCTCCCTCTGGTTATGGGTCTGTGGGCTATGGGAACACTGCTCCTTGGGGTGCTCAAAGTGGAGGCGGCGGCGGTCCTGGTTCGGCTGCTGCTGGTCAATCCCCTAGTGGAGCTGCTGGATATGGGAGTCAAGGACATGGATATGGAGGGTATGGTGGGTATGATGGAAGTGATAGTTCTTATGGGAACCCTGGTGTATATGGTGCTGTTGGAGGGCGTACTGGGAGTGCATCCAATACTAATGCTAGTGGTCCTGATGGAAGTGAACTACAAGGTAGTGGTGGCAGTGGAAGCTACGTGGGCACTGGCTATGGGGATTCAAATGGAAATTCAGGTTATGGAAATGCAGCTTGGAGATCTGAACATTCTCAAGCCTCTGGAAATTATGGGACTCATGGAAATGGCTCACATGGTGGGCAAGTTGGTTATGGTGGTGGCTATGGTGGTGCTCAGTCTCGCCAATCCCAACAGCAGTAA 1413 0.482 MDSDEGKLFIGGISWETTEDKLKEHFTNYGDVLNASVMRDKNTGKPRGFAFVVFSDPAILDRVLQDKHVIDGRTVDAKRALSREDQQISGNSRAGNPNSALHSGNGGNMKTKKIFVGGLPPTLSEENFRQYFESYGNVTDVVVMYDQSTGRPRGFGFISFDTEDAVERVLHKTFHDLNGKQVEVKRALPKDANPGSGGRMMGGSSGGGGYQGYGASGGNQNAYDGRVDSSRYMQSQSNAGGFPPYASSGYSAPGYGYGPANNGMGYGAYGSYGAAAAGYGGPAGATYGNPNVPNAAYAGGPPGGPRSSWPAQAPSGYGSVGYGNTAPWGAQSGGGGGPGSAAAGQSPSGAAGYGSQGHGYGGYGGYDGSDSSYGNPGVYGAVGGRTGSASNTNASGPDGSELQGSGGSGSYVGTGYGDSNGNSGYGNAAWRSEHSQASGNYGTHGNGSHGGQVGYGGGYGGAQSRQSQQQ* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1245 470 MobiDBLite consensus disorder prediction 389 447 - -
Lan11g1245 470 MobiDBLite consensus disorder prediction 81 108 - -
Lan11g1245 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lan11g1245 470 SMART rrm1_1 113 185 IPR000504 GO:0003723
Lan11g1245 470 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lan11g1245 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Lan11g1245 470 MobiDBLite consensus disorder prediction 328 352 - -
Lan11g1245 470 MobiDBLite consensus disorder prediction 84 106 - -
Lan11g1245 470 Gene3D - 106 226 IPR012677 -
Lan11g1245 470 Gene3D - 4 88 IPR012677 -
Lan11g1245 470 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 468 - -
Lan11g1245 470 SUPERFAMILY RNA-binding domain, RBD 3 108 IPR035979 GO:0003676
Lan11g1245 470 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lan11g1245 470 CDD RRM2_DAZAP1 110 189 IPR034131 GO:0003723
Lan11g1245 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 173 IPR000504 GO:0003723
Lan11g1245 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Lan11g1245 470 SUPERFAMILY RNA-binding domain, RBD 110 219 IPR035979 GO:0003676
Lan11g1245 470 MobiDBLite consensus disorder prediction 389 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1245 Lan-Chr11 18341797 18345358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1245 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 23.469 6.79e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1245 K14411 - gmx:100811267 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1245 11 18341797 18345358 Lan4g1227 4 20140674 20159499 LSH