Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1239 ATGATCCTCAACCGTGAGCTCCACTCCTTGAGGCTCCCTGTGACCTTCTTGTCACTACCACTGGTTGGATCGTTTCTAGCTCGTGATACCACTGTTAGAGAAGAAGAAGAACAGAAGAGTAATGCACAGAAGAAGAAGCCTGAATCTTTTACCACCAAGCGAGCAACTCTGGCTAACCCTTGGTGGACGAGTCAGGTGGGGTTATCTGGGGTTGACCACCCAGGAACCCATTCACCTGGCTTCATCGCCAAACCCCAGACGAACCTCACCATCAACGAAACAAATAGTGGTGGCAACAACCGAGATCTTGAAGATGAAGACAATAAGGGGGATGATCAAGAACCAAGAGAGGGTGCAGTTGAAGTTGGAAACCGGAGACCAAGGGGAAGACCAGCTGGATCAAAGAACAAACCAAAACCACCAATCTTTGTGACAAGGGACAGCCCAAATGCCCTAAAAAGCCATGTGATGGAGATAGCTGCAGGTGCTGATGTTGCTGAATGTGTAGCACAATTTGCAAGGAGGCGCCAGTGTGGGGTATGTGTCCTTAGTGGGAGTGGCTCTGTGGCTAATGTCACTCTTAGACAACCATCTGCTCCAGGTGGTGCTGTTGCACTTCATGGAAGGTTTGAGATCCAAACCTTAACTGGTGCATTCTTACCTGGACCTTCCCCTCCGGGGTGCACTGGGCTCACGGTGTACCTTAATGGAGGGCAAGGTCAGGTTTTGGGAGGAAGTGTTGTTGGGTCTTTAGTAGCTGCTGGACCTGTTATGATCATTGCTGCAACTTTTTCTAATGCCACTTATGAGAGATTGCCACTTGATGATAGTAATGATGAGGGGCCTGGTGGTGCTGTGGCTGCGACCACACATGATGGTGGCAGCGGTGGATCATCACCACCGCGGCCACCCGGAATAGGAAGCATGAGTGGGGGTCAGTTGCAACAGGCTGGGATTCCAGATCCACCAGTATCTCATCCTTTGTATAATCTACCGCCAAATCTGTTGCATAATGGAGGGCAAATGGGGCATGAAGCTTTTGCTTGGGCTCATGGAAGGCCACCTTATTGA 1071 0.5023 MILNRELHSLRLPVTFLSLPLVGSFLARDTTVREEEEQKSNAQKKKPESFTTKRATLANPWWTSQVGLSGVDHPGTHSPGFIAKPQTNLTINETNSGGNNRDLEDEDNKGDDQEPREGAVEVGNRRPRGRPAGSKNKPKPPIFVTRDSPNALKSHVMEIAAGADVAECVAQFARRRQCGVCVLSGSGSVANVTLRQPSAPGGAVALHGRFEIQTLTGAFLPGPSPPGCTGLTVYLNGGQGQVLGGSVVGSLVAAGPVMIIAATFSNATYERLPLDDSNDEGPGGAVAATTHDGGSGGSSPPRPPGIGSMSGGQLQQAGIPDPPVSHPLYNLPPNLLHNGGQMGHEAFAWAHGRPPY* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1239 356 MobiDBLite consensus disorder prediction 99 124 - -
Lan11g1239 356 MobiDBLite consensus disorder prediction 73 147 - -
Lan11g1239 356 Gene3D - 153 279 - -
Lan11g1239 356 MobiDBLite consensus disorder prediction 273 325 - -
Lan11g1239 356 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 62 356 IPR014476 GO:0003680
Lan11g1239 356 MobiDBLite consensus disorder prediction 81 98 - -
Lan11g1239 356 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 62 356 - -
Lan11g1239 356 CDD DUF296 153 264 IPR005175 -
Lan11g1239 356 MobiDBLite consensus disorder prediction 33 51 - -
Lan11g1239 356 MobiDBLite consensus disorder prediction 33 56 - -
Lan11g1239 356 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 266 IPR005175 -
Lan11g1239 356 ProSiteProfiles PPC domain profile profile. 149 285 IPR005175 -
Lan11g1239 356 SUPERFAMILY AF0104/ALDC/Ptd012-like 150 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1239 Lan-Chr11 18211759 18215941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1239 57 356 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 56.129 8.21e-97 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1239 - - lang:109359790 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1239 11 18211759 18215941 Lan20g0863 20 8110130 8112054 LSH
Lan11g1239 11 18211759 18215941 Lan4g1233 4 20208080 20209106 LSH