Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1231 ATGGATCTTGTAAGGAAAAGATATTTGATCCATTTGTCACAACATGAAGCACATTCTCCAATCACAAGTCAAGAGAGTTCTACAATCTTTCACCCTCTCATGCATCATTCTAGCACAAGTTTCCCAATCATAGCAATAGCTATAATAGGAATACTTGCCACAGCTTTCTTGCTTGTGAGTTACTACATCTTTGTGATCAAGTGCTGCCTCAATTGGCACAGCATTGATCTTCTAAGACGCTTCTCTCCATCGACGAGGCGCGAAGATCCATCACCTACATACTCACCAGCTACCGAACCTCGAGGACTAAATGATGCAATGATTAGATTAATCCCATTGATTCAATACAAGACCAAACAAGAAGGTGGTACTACTAGTAGTAGTAGTAATAGAGAGTTTGGAGAAAGAAGCATTTGTGAATGTTCTGTTTGCTTGAATGAGTTTCAAGAAGATGAGAGGCTTAGGATTATACCAAATTGCAGCCATGTATTTCACATTGATTGCATAGATGTTTGGCTTCAGAACAACGCTAACTGTCCACTTTGTAGAACAAGCATTTCTTTAACAAGCAGATTCCAAATTGATCAGCTTCTAACCAGAAACACCACTTTTTCTATCCCTCAAGATCAAAACCCCAACATTGGTGGTGATGAAGATTTTGTAGTGATTGAATTAGGCAATGATGATAATAATGATAGAGGCCAAAACAATGCTTTGGAGTTACCACCAACATGTCCTATTATTAGTCAATCACCAAGGAGATTATTGAAAGGGAGGAAGCTGCATAATAAAGTGATAAGCATGGGAGATGAGTGTATTGATATTAGAGCCTATGAACAGTTTTCAGTGCAACCTATAAGGAGGTCTTTTTCAATGGACTCATCAGGGGATAGACACTTGTATTTGACAGTTCAAGAAGCATTGCAGCAGAATAAGCAAGTTATTAATGAGGTTAGCTCAATTGAAGGATGCAGTGGTAGTGGTAGAGCCAAGAGATCATTCTTTTCCTTTGGACATCTTAGTAGATCCAGAAGTTCTGTCCAACCTGTTTATTTGGAACCTTGA 1065 0.3878 MDLVRKRYLIHLSQHEAHSPITSQESSTIFHPLMHHSSTSFPIIAIAIIGILATAFLLVSYYIFVIKCCLNWHSIDLLRRFSPSTRREDPSPTYSPATEPRGLNDAMIRLIPLIQYKTKQEGGTTSSSSNREFGERSICECSVCLNEFQEDERLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLTSRFQIDQLLTRNTTFSIPQDQNPNIGGDEDFVVIELGNDDNNDRGQNNALELPPTCPIISQSPRRLLKGRKLHNKVISMGDECIDIRAYEQFSVQPIRRSFSMDSSGDRHLYLTVQEALQQNKQVINEVSSIEGCSGSGRAKRSFFSFGHLSRSRSSVQPVYLEP* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1231 354 PANTHER RING-H2 FINGER PROTEIN ATL16 24 353 - -
Lan11g1231 354 PANTHER RING-H2 FINGER PROTEIN ATL16 24 353 IPR044600 GO:0016567|GO:0016740
Lan11g1231 354 CDD RING-H2_PA-TM-RING 140 183 - -
Lan11g1231 354 SMART ring_2 141 182 IPR001841 -
Lan11g1231 354 Pfam Ring finger domain 140 183 IPR001841 -
Lan11g1231 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 188 IPR013083 -
Lan11g1231 354 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Lan11g1231 354 SUPERFAMILY RING/U-box 140 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1231 Lan-Chr11 18117704 18119314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1231 32 354 C3H Transcription Factor Family AT1G04360 47.934 2.76e-90 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1231 - - gmx:100794749 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1231 11 18117704 18119314 Lan20g0857 20 8028436 8029666 LSH
Lan11g1231 11 18117704 18119314 Lan4g1237 4 20266183 20267985 LSH