Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1164 ATGGGAGTCCACGGTCTCTGGGAACTACTCTCCCCCGTCGGCCGCCGCGTCTCCGTCGAGTCCCTCGCCGGAAAAACACTCGCCGTCGATGCTAGCATATGGATGGTTCAATTTCTGAAGGCAATGCGTGATGAAAAGGGAGAAATGATTCGCAATGCTCACTTGCTCGGTTTCTTCCGTCGCATTTGCAAGCTTCTTTTCCTCCGGATCAAGCCGGTATTTATCTTTGATGGAGGAACCCCTGCCCTTAAGCGCCGCACCGTGATTGCGCGCCGCAGGCAGCGCGAGAACGCTCAGGCCAAAGTCCGGAAAACTGCTGAGAAATTGCTTCTCAATCATTTAAAGGCATTGAGGTTGAAAGAATTAGCTGATGATATTAAGAACCAGAGGCTGAAGCCAAAGAATGATACCAAGAGTCAGAAAAAATCTGATAAGATGGACTGCATTGACAATGATTCAGGAAAAAGAAATATGAAAGAGCTAGATGAGATGTCTGCATCTAAGGAGGAGAGGAATTTATCGCAAACAATAACATCGACAATTTGCAACCAGGAGAAGCTTGATGAAATGCTGGCAGCATCTATTGCTGCAGAGGAAAATGGAATACTATCCAGAAATGAAGCATCATCATCTTATGTAGCTAATCCTTCAGAGGAAGAATGTGTCGCAGATGAAGAAATGATACTGCTTAAAGGAAAGAAAAAAGGATTGATGAATGAGGTTGAAAACCAGAAACAACATAAGGTCATTGATAAGGACAAGGGGAAGGGGATACTGTCCTGTGAAACTGACATGGTTGGCTGTAGCCCCAGATGTGACATCTTGACATCTAAGAGTGACAATCAAGACAAACTTGATGAAATGTTAGCTGCATCTATTGCTTTAGAGGAGAATGCAAGGAATACTACATCAATTTCTCTTGAGGCTTCTACTACCATTGAGGAAGAGGATGGTGGCTACAACGAAGATGAAGAGATGATACTGCCACCAATGCATGGTGAAATTGATCCTGTTGTTCTAGCCTCTTTGCCTCCATCAATGCAATTGGACCTCCTTGTTCAGATGAGAGAGCGGTTGATTGCAGAGAACAGACAAAAGTATCAGAAAGTCAAGAAGGATCCTGCAAAATTTTCAGAGCTACAAATACAAGCTTACCTTAAAACTGTTACTTTCCGGCGGGAGATAGATGAAGTACAGAAAGCTGCTGCTGGGAGAGGTGTAGGAGGTGTACAGACTTCGCGGATCGCTTCTGAGGCCAACAGAGAATATATATTTTCATCATCTTTTATGGGTGACAAACAAGAACTTACCTCCAACAGATTAGGGAAAATTAAAGATGCACCACTAGAAGCACGTGGAACACACCCGTCACAGAAATTTGTGAATAACATTGCAGTAGTAACAGGTGATGATTCTAATACTTCAAGTGGATTTGCTTGCTATGAACCCGATGATCATGTTGATGATAGTATTCAGACATATCGTGATGAGAGTGGTCGAATTCGAGTCAGTAGATCGAGAGCTATGGGGATGTGTATGACCCGTGATTTACAAAGGAATTTGGATATGATGAAAGAGATTGAGCAGGAAAGAACATATGTGAATAGGGCTTCAAATAATAACACAGTGCTAAATGCTGAGAATAATGCTCCATTTGAAAATTCTGGGATTCAGCTTCCATGTAATTCACAAGAGATGAATGTTGACTTAGTTAGAGAGAATTTTCAAAATGAGCAGTCCATGTTAGACAGGGATACTTCTATAGAGATATCCTTTGAATATGATTGCAGGAGTAAGTTTTCAGATGGCGAGGATGACATATTTGCTAGCTTAGTAGGAAGAAATTCCAGGGAAATCTTTTGTGCTAATGATATGGCAGGAAAAGAACAAATTTCTGATTCTGATTCAGATTTTAATTTGGAAGAAGGAATTATTGAAGATAAGAATACCAATTTATGTGAAGAAAATAAGGTAGAACTGATCTCTTCTATTGCAGATGGGGATAATAATGATGAGAGCGAGGTAGAATGGGAGGATGGAGACTGTGATGGTGCTAAAAGCACCTTACTATCTCCATTTGAATCAGAAAAGGTAGCATCTCGAGGGTGCTTGGAGGAGGAGTCTGATTTGCAGGAGGCAATAAGGAGAAGCCTTGATAGTATAGGGGATGGGGAACCTAAGCACATGTCATCTGTAGATGAGCGTTCAACTGCTGATGAGAATAAATTGGGTCATGGAGAAGACAATGATGTTAATCCTGATTGTCCTGGCCCAATAGATTTAAATGATAATGTAGGATTCCTGAATAATAATACAAACAATACAGGTGATTCTACTTTGCCTAGAGAAGACAATACTGAACAAAATGAATTACCCGAAATTGTAGATGGAGATGAAAAACATGATTTTATGGCTAGAAATAACCCACAAACTCTGCATTTCCCTGGAGGTCAGTCAAATTCATCACTGTCATTTAATTTCAAAGACAAAGAACCGTTGGTTGACAAACCTTGCATACTGGATGCACGCTCTCGTCCTGAAGGTTCAACTTCAGATGCAAATGCAACAACAGAGGATGAGATCAATATGGTCGTAGAGCAGTTATCGGATAATACTCTTGGTGTCACTAAAGAGGAGAAAACGACCTATATTAATGAATCTGTACCATTGAGTAATTTTAATGACAATACCAAGCCTGTTATTCCTTTGACGGAGTCATCCTTGAAAGGATCAACAGAAGACCTCAATATGGAGCCGAAGTTGCTTGCAGTGGACAATGATAGAACTTTCTACGTGGGAGGGAACAATAACCTTGCCAAAGATGCAGTGAAAACCTCTGGAGATTTACCTGCCAATGTAGCTGAGATTAGATTGGAGGAAGAAATGCGAGTTCTCGATCAAGAATATATTGAGCTACAAAATGAGCAGAGAAACCTTGAACGTAATGCAGAATCTGTAAACAGTGAAGTATTCGCAGAATGTCAGGAACTACTTCAAATGTTTGGCTTGCCATATATTATTGCTCCAATGGAAGCTGAAGCGCAGTGTGCTTATTTGGAACTCGCTAAACTGGTTGATGGTGTTGTGACTGATGACTCCGATGTCCTTCTATTTGGGGCTCGAAGTGTTTACAAGAATATATTTGATGACCGCAAATATGTAGAGACATACTTCATGGAGGACATTGAGAAGGAGCTTGGATTGACCAGAGAAAAAATAGTACGCATGGCATTATTGCTTGGGAGTGACTATACTGAAGGTGTAAGTGGGATTGGCATTGTTAATGCTATTGAGGTTCTAAATGCATTCCCTGAGGAAGATGGCCTTGTTAAATTCCGGCAGTGGGTGGAGTCACCAGATCCTACCATACTTGGAAGGTTGGATGCAAAAAGTGGATCCAAAACCAAAAAGAGAGGGTCAGAAGTTGAAGAGAAGATAAATGTCTCGAAAAGCAATATTGAAGAGTCTGCATTAGACCCCCATGCTCCGGAGCAAAAGGAGTCTCTGGATTGCGTACAAGAAATAAAAAAAACTTTCTTCCATAAGCATAGAAATGTTAGCAAGAATTGGCATATTCCTTCTTCTTTTCCGAGTGAAACAGTTATGTCTGCTTACTATTCTCCCCAAGTTGACAAGTCAATCGAGCCTTTCACGTGGGGAAAGCCAGATCATCTCGTTCTTCGCAAATTGTGCTGGGAAAAATTCGGATGGGTTAGCCAAAAAGCAGATGAATTGCTATTACCTGTTTTAAAAGAATATAACAAACATGAGACTCAACTTCGGTTGGAAGCATTTTACAGCTTCAATGAAAGATTTGCAAAAATTCGTAGCAAGAGAATTAAGAAAGCTGTAAAAGGTATTACTGGTAAGCAACCTGCAGATTTGACAGATAATTCTTTGGATGATTTAAACAAAAGTGGGAAGAATGAAAGACGAAGTTCTGTTGAACCTGGGGATTACAAATCGGATGATTCTAAGGGAACAGGGGAGGGACTTGAAAGTAGGAAGAAATCTAATACTAAAAAGTCAAATAAAAGAAAGAACAATGGGGATACTTTTGGCAAGGCGCGTTCAAGGACAAAGAAAATCAGTGATGGTCGTTCAGCTCCTGGTACATCTGAGGTGGAGAATTTACATGCATGTATGCAGACAGAAGAAGAGCAATGTGATGTTAAGGAATTGATTAGAAATAGAAGTGGTAGAGGCAGAGGAAGAGGTAGAAGCTTGGGAGTAAAACGAGGAAGGGGAAATGAATGTCGTGGTTTTCAGTCACGTGAAACCTCATCTAGCAGTAGTGACACTGTTGATCATGTCCCAAGTGTGCATCCTGATGTGTCAAAATTTCCACAAGAAGTGCGAAGGTCAACGCGATCTCGGAAACCTGTCAAGTATTCTTTGAATGACCTTGAAGTTGAAGATTCTGATGATGCATTTGATAAGATAAACCAGCCATTCTTGCATGATGAGCCAGCAGAAGAAACCGTATCTGATATTCATGGTAGATGTGGAGAGGCTGCAACTGATCTCAGCAGAGGAAAAGAAACCAGTGAAGCCGATATTCCTGTAAAGGATAACTTGCCTAGAGAAAATTTTCAGTCAGAAAGTTCTTTTCACACAGATGATAATTCTTCTGATTACTACCTTAAAATAGGAGGTGGGTTCTGTTTGGATGATAGCAATACAACTAACAATGATGATGCAATTGATGTCAATACTGCTACAGCTGATTATACTGCAGACCTTCCATCATGTTCTGATTTTTTCGACGAGACTATCCGAAACAAAAATAGTTCAGATGTATTGTTTTCTGGCACTGAAAAAGCTGAAACTGAAGTGCAAGATGGTAATAAAGAGGTAAATGATGACCTTCTAAATGCTGATTCTGAAATGGGGGTCTTGAAACCAGAGAATACTAATGAGAACAGTGGAATCTCCATGGGAGCTTTTAGTGCTATACCGTTTTTGAAGAAAAGAAGGATGAACTGA 4986 0.4059 MGVHGLWELLSPVGRRVSVESLAGKTLAVDASIWMVQFLKAMRDEKGEMIRNAHLLGFFRRICKLLFLRIKPVFIFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKLLLNHLKALRLKELADDIKNQRLKPKNDTKSQKKSDKMDCIDNDSGKRNMKELDEMSASKEERNLSQTITSTICNQEKLDEMLAASIAAEENGILSRNEASSSYVANPSEEECVADEEMILLKGKKKGLMNEVENQKQHKVIDKDKGKGILSCETDMVGCSPRCDILTSKSDNQDKLDEMLAASIALEENARNTTSISLEASTTIEEEDGGYNEDEEMILPPMHGEIDPVVLASLPPSMQLDLLVQMRERLIAENRQKYQKVKKDPAKFSELQIQAYLKTVTFRREIDEVQKAAAGRGVGGVQTSRIASEANREYIFSSSFMGDKQELTSNRLGKIKDAPLEARGTHPSQKFVNNIAVVTGDDSNTSSGFACYEPDDHVDDSIQTYRDESGRIRVSRSRAMGMCMTRDLQRNLDMMKEIEQERTYVNRASNNNTVLNAENNAPFENSGIQLPCNSQEMNVDLVRENFQNEQSMLDRDTSIEISFEYDCRSKFSDGEDDIFASLVGRNSREIFCANDMAGKEQISDSDSDFNLEEGIIEDKNTNLCEENKVELISSIADGDNNDESEVEWEDGDCDGAKSTLLSPFESEKVASRGCLEEESDLQEAIRRSLDSIGDGEPKHMSSVDERSTADENKLGHGEDNDVNPDCPGPIDLNDNVGFLNNNTNNTGDSTLPREDNTEQNELPEIVDGDEKHDFMARNNPQTLHFPGGQSNSSLSFNFKDKEPLVDKPCILDARSRPEGSTSDANATTEDEINMVVEQLSDNTLGVTKEEKTTYINESVPLSNFNDNTKPVIPLTESSLKGSTEDLNMEPKLLAVDNDRTFYVGGNNNLAKDAVKTSGDLPANVAEIRLEEEMRVLDQEYIELQNEQRNLERNAESVNSEVFAECQELLQMFGLPYIIAPMEAEAQCAYLELAKLVDGVVTDDSDVLLFGARSVYKNIFDDRKYVETYFMEDIEKELGLTREKIVRMALLLGSDYTEGVSGIGIVNAIEVLNAFPEEDGLVKFRQWVESPDPTILGRLDAKSGSKTKKRGSEVEEKINVSKSNIEESALDPHAPEQKESLDCVQEIKKTFFHKHRNVSKNWHIPSSFPSETVMSAYYSPQVDKSIEPFTWGKPDHLVLRKLCWEKFGWVSQKADELLLPVLKEYNKHETQLRLEAFYSFNERFAKIRSKRIKKAVKGITGKQPADLTDNSLDDLNKSGKNERRSSVEPGDYKSDDSKGTGEGLESRKKSNTKKSNKRKNNGDTFGKARSRTKKISDGRSAPGTSEVENLHACMQTEEEQCDVKELIRNRSGRGRGRGRSLGVKRGRGNECRGFQSRETSSSSSDTVDHVPSVHPDVSKFPQEVRRSTRSRKPVKYSLNDLEVEDSDDAFDKINQPFLHDEPAEETVSDIHGRCGEAATDLSRGKETSEADIPVKDNLPRENFQSESSFHTDDNSSDYYLKIGGGFCLDDSNTTNNDDAIDVNTATADYTADLPSCSDFFDETIRNKNSSDVLFSGTEKAETEVQDGNKEVNDDLLNADSEMGVLKPENTNENSGISMGAFSAIPFLKKRRMN* 1662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1164 1661 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 226 1659 - -
Lan11g1164 1661 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 229 - -
Lan11g1164 1661 MobiDBLite consensus disorder prediction 717 749 - -
Lan11g1164 1661 MobiDBLite consensus disorder prediction 717 753 - -
Lan11g1164 1661 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 1 229 - -
Lan11g1164 1661 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 226 1659 - -
Lan11g1164 1661 CDD H3TH_XPG 1071 1212 - -
Lan11g1164 1661 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1068 1274 IPR036279 -
Lan11g1164 1661 MobiDBLite consensus disorder prediction 1301 1364 - -
Lan11g1164 1661 MobiDBLite consensus disorder prediction 664 689 - -
Lan11g1164 1661 ProSitePatterns XPG protein signature 2. 1002 1016 IPR019974 GO:0016788
Lan11g1164 1661 SMART HhH_4 1070 1103 IPR008918 GO:0003677|GO:0003824
Lan11g1164 1661 Gene3D - 1 183 - -
Lan11g1164 1661 Coils Coil 955 989 - -
Lan11g1164 1661 SUPERFAMILY PIN domain-like 2 1083 IPR029060 -
Lan11g1164 1661 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Lan11g1164 1661 CDD PIN_XPG_RAD2 985 1069 - -
Lan11g1164 1661 Gene3D - 1068 1179 - -
Lan11g1164 1661 Pfam XPG I-region 1002 1083 IPR006086 GO:0004518
Lan11g1164 1661 SMART xpgineu 999 1068 IPR006086 GO:0004518
Lan11g1164 1661 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Lan11g1164 1661 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Lan11g1164 1661 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Lan11g1164 1661 Gene3D - 930 1067 - -
Lan11g1164 1661 SMART xpgn3 1 98 IPR006085 GO:0004518
Lan11g1164 1661 MobiDBLite consensus disorder prediction 130 156 - -
Lan11g1164 1661 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Lan11g1164 1661 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Lan11g1164 1661 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Lan11g1164 1661 MobiDBLite consensus disorder prediction 1394 1460 - -
Lan11g1164 1661 MobiDBLite consensus disorder prediction 767 786 - -
Lan11g1164 1661 MobiDBLite consensus disorder prediction 1421 1437 - -
Lan11g1164 1661 MobiDBLite consensus disorder prediction 767 782 - -
Lan11g1164 1661 MobiDBLite consensus disorder prediction 1283 1376 - -
Lan11g1164 1661 CDD PIN_XPG_RAD2 2 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1164 Lan-Chr11 16682368 16697597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1164 993 1100 Core DNA Replication Machinery Family AT5G26680 36.036 1.63e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1164 K10846 - gmx:100820295 1985.3