Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1163 ATGGGTTATCTGCACAAAGCTTCGAAAACCCTACGGCAATGGAAATACATGTCTTCAACCTCATTTTCTTCATTCCCATTCATTCCATTTACCAACAGAATAACCCATCCACGCTTTTGTTCCAATTCACGGCAAAACAACAAAGAACAAAACGCCATAGATTTGAATCAGTACCCTCCAGAGCTTGTTAGAAACTTCTCTATCATTGCACATGTTGATCATGGAAAGTCTACCCTTGCTGATCGCCTTCTTGAACTCACTGGAACCATTAAGAAAGGTCATGGCCAGCCTCAATATCTTGATAAATTGCAGGTGGAGAGAGAAAGGGGAATCACAGTTAAAGCTCAGACTGCAACCATGTTCTATAAGCACAGCGTAAATGGTGACAATATTAGTGACGGAAAGGAGTCATGTAAGTTTTTGCTGAATCTTGTTGACACTCCCGGGCACGTGGATTTTAGTTATGAAGTGTCGAGGTCATTGGCAGCTTGTCAGGGTGTGCTTTTGGTTGTTGATGCAGCTCAAGGAGTCCAAGCACAAACTGTTGCTAACTTTTACCTTGCTTTTGAGTCTAACTTAACCATTGTACCGGTCATAAACAAGATTGACCAGCCAACTGCCAATCCCGATCTTGTTAAAGCCCAGTTAAAGTCAATGTTTGATCTCGACCCAAGCGATGTACTGCTGACATCTGCTAAGACTGGACAGGGTCTTGAGAGTATCATTCCGGCAGTCATAGAGCGCATACCTCCGCCTTCTGGGAGTTGCAATTCTCCTCTACGAATGCTTTTGCTTGATTCGTATTATGATGAATACAAAGGGGTAATATGCCATGTTGCTGTTGTTGATGGTGCCCTGCGCAAGGGGGATAAGATTTCTACTGTAGCTACTGGTCAGTCATATGAAGTTTTTGATGTAGGCATCATGCATCCTGAACTTAAACCTACCGGAATCTTGCTTACTGGACAAGTTGGTTATGTTGTAAGTGGCATGCGCTCAACCAAAGAGGCACGTATTGGAGATACAATTTACCATACTAAAACCGCTGTTGAACCTCTCCCAGGCTTCAAGCCAGCAAAACACATGGTATTCTCTGGTCTTTATCCAGCAGATGGATCGGATTTCGAAGCACTCAACAATGCAATAGAGAGGTTGACATGCAATGATGCCAGTGTTTCTATTGCTAAAGAAACCAGCACAGCTCTAGGTCTGGGGTTCAGGTGTGGATTTTTAGGCTTACTACACATGGATGTTTTTCATCAACGGCTTGAACAGGAGTATGGAGCTCATGTTATCTCAACTGTTCCTACCGTGCCCTATATATTCGAGTATTCTGATGGAAGCAAATTAGAAGTTCAGAATCCTGCTACGTTACCCTCTAATCCCAAGCAAAAAGTAATAGCCTGTTGGGAACCTACAGTGCTAGCTACTATAATCATTCCTAGTGAGTATGTGGGACCCGTTATTACCCTTGTCTCAGAGCGTAGGGGTCAGCAGTTGGAGCACTCATTCATTGACAGCCAAAGGGTATTCATGAAGTATCGCATGCCTTTGAAAGAAATTGTTATTGACTTTTATAATGAACTGAAGAGTATAACATCAGGCTATGCATCATTTGATTATGAAGATGCAGATTATCAACAATCCGATCTGGTGAAACTTGATATCCTCTTGAATGGGCAACCAGTTGATGCGATGGCAACCATTGTTCATAAGGTGAAAGCATATCGTGTTGGGCGTGAACTGGTGGAAAAATTAAAGAAAGCCATAGACAGGCAAATGTTTGAGATATCCATACAAGCAGCCATTGGGTCAAAGATTATATCTAGGGAGACGATTTCTGCTTTGAGGAAAAATGTTCTTGCCAAGTGTTATGGTGGTGACGTTAGTCGAAAGAGGAAGCTATTGGAGAAGCAGAAGGAAGGAAAGAAGCGAATGAAACGTGTTGGTTCTGTTGATATACCGCAAGAAGCTTTCCATGAACTATTGAAGGTTTCATAG 2001 0.4248 MGYLHKASKTLRQWKYMSSTSFSSFPFIPFTNRITHPRFCSNSRQNNKEQNAIDLNQYPPELVRNFSIIAHVDHGKSTLADRLLELTGTIKKGHGQPQYLDKLQVERERGITVKAQTATMFYKHSVNGDNISDGKESCKFLLNLVDTPGHVDFSYEVSRSLAACQGVLLVVDAAQGVQAQTVANFYLAFESNLTIVPVINKIDQPTANPDLVKAQLKSMFDLDPSDVLLTSAKTGQGLESIIPAVIERIPPPSGSCNSPLRMLLLDSYYDEYKGVICHVAVVDGALRKGDKISTVATGQSYEVFDVGIMHPELKPTGILLTGQVGYVVSGMRSTKEARIGDTIYHTKTAVEPLPGFKPAKHMVFSGLYPADGSDFEALNNAIERLTCNDASVSIAKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTVPTVPYIFEYSDGSKLEVQNPATLPSNPKQKVIACWEPTVLATIIIPSEYVGPVITLVSERRGQQLEHSFIDSQRVFMKYRMPLKEIVIDFYNELKSITSGYASFDYEDADYQQSDLVKLDILLNGQPVDAMATIVHKVKAYRVGRELVEKLKKAIDRQMFEISIQAAIGSKIISRETISALRKNVLAKCYGGDVSRKRKLLEKQKEGKKRMKRVGSVDIPQEAFHELLKVS* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1163 666 SUPERFAMILY EF-G C-terminal domain-like 470 564 IPR035647 -
Lan11g1163 666 Gene3D - 550 624 IPR038363 -
Lan11g1163 666 PRINTS GTP-binding elongation factor signature 65 78 IPR000795 GO:0003924|GO:0005525
Lan11g1163 666 PRINTS GTP-binding elongation factor signature 108 116 IPR000795 GO:0003924|GO:0005525
Lan11g1163 666 PRINTS GTP-binding elongation factor signature 143 153 IPR000795 GO:0003924|GO:0005525
Lan11g1163 666 PRINTS GTP-binding elongation factor signature 195 204 IPR000795 GO:0003924|GO:0005525
Lan11g1163 666 Pfam Elongation factor G C-terminus 471 556 IPR000640 -
Lan11g1163 666 Gene3D Translation factors 255 353 - -
Lan11g1163 666 PANTHER TRANSLATION FACTOR GUF1, MITOCHONDRIAL 49 664 - -
Lan11g1163 666 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 101 116 IPR031157 -
Lan11g1163 666 TIGRFAM small_GTP: small GTP-binding protein domain 67 242 IPR005225 GO:0005525
Lan11g1163 666 CDD LepA 64 252 - -
Lan11g1163 666 Gene3D Elongation Factor G (Translational Gtpase), domain 3 354 435 - -
Lan11g1163 666 Gene3D - 436 549 - -
Lan11g1163 666 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 61 253 IPR000795 GO:0003924|GO:0005525
Lan11g1163 666 TIGRFAM lepA: elongation factor 4 63 665 IPR006297 GO:0005525
Lan11g1163 666 PANTHER TRANSLATION FACTOR GUF1-RELATED 49 664 IPR006297 GO:0005525
Lan11g1163 666 Gene3D - 61 254 IPR027417 -
Lan11g1163 666 CDD EF4_II 260 345 - -
Lan11g1163 666 SUPERFAMILY EF-G C-terminal domain-like 362 439 IPR035647 -
Lan11g1163 666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 295 IPR027417 -
Lan11g1163 666 CDD EF4_III 361 436 - -
Lan11g1163 666 Hamap Elongation factor 4 [lepA]. 59 666 IPR006297 GO:0005525
Lan11g1163 666 CDD lepA_C 471 550 IPR035654 -
Lan11g1163 666 Pfam Elongation factor Tu GTP binding domain 63 250 IPR000795 GO:0003924|GO:0005525
Lan11g1163 666 Pfam GTP-binding protein LepA C-terminus 558 664 IPR013842 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1163 Lan-Chr11 16673251 16679226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1163 63 204 Eukaryotic Initiation Factors Gene Family AT1G56070 38.889 1.59e-23 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1163 K21594 - gmx:100781092 1167.14