Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1150 ATGGAAGCTGCTTCCTCATCCACACCTTTCTTGGGAATCAGACAAGAAAATCAAAGTCAGATTACACAGCACCAACCATCCACAGCTGGTGCCTCCACTGCTGATTCTACAGTGTCTCAAAAGAAAAAGAGGAATCATCCAGGAACACCATATCCAGATGCTGAAGTAATAGCACTATCTCCCAAGACCCTGATGGCAACAAACAGGTTTATATGTGAAGTGTGCAACAAAGGGTTCCAAAGAGAGCAAAACTTACAGCTCCATAGAAGAGGGCACAACCTTCCTTGGAAGCTAAAGCAGAAGACAACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAACCAACATGTGTTCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACAGGGATTAAGAAACACTACTCTCGCAAGCATGGTGAGAAAAAGTGGAAGTGTGAAAAGTGTTCTAAGAAATATGCAGTTCAATCAGATTGGAAAGCTCATTCTAAGACTTGTGGCACCAGAGAATATAGATGTGACTGTGGCACTCTCTTCTCCAGGCGTGATAGTTTCATCACTCATAGGGCTTTCTGTGATGCACTATCTCATGAAACTGCAAGACACCCTTCAAACCTAAACCCTTTGGGAACTCATTTGTATGGCACAACAAATCACATGAGTTTAACTCTATCTCAAGTTGGTGCCCAAATTTCCCACCTTCAAAACCAAAATCAAGAAACCTCTAATAGTATCTTGAGCCTTGGCAATGCTTCTTTGGCAGCACCAAAATTTGAGCACATGCTCTCCCCTTTGCATCACCAACAACAATCATCATATGGAGTATTTCAATCACCACATTCAATGCCTAATAATTCCTCAGCTGGTTTCTTCATGAATGACCCAAATCAAGGATTTCATCAAGAACTCCAATCTCATCATCAACAAGGAACAATCTCAAGCCACAAACAACTTTATAGTCTTATGCAACTTCCTAATCTTCAAGGCAACACCAACAACAACAACACTACTTCTGCTCCTACTAATATGTTTAACCCCAGTTTCTTTCCAAATAGTAACAACAGCAGTGGCAGCATAATCTCTGATCAATTCAATAACCAAGGAACAACACTTTACACAAATGATAGCCCTAGTAATCACCACTTTGGGTCTGGTAGTTTATCTTCACTCTTCGGAAATTCATCTTTGCAACAAGAAACCATGTCTCCACATATGTCTGCCACTGCATTGCTTCAAAAAGCTGCTCAAATGGGTTCAACCACAACAAACACCAATGCTTCCACTATGCTAAGAGGACTTGGCAGTTCTTCAAACAATGGTGTAGAATCTTTTGGAAGTGATAGTAGGGAAGAAGGTATAAGATCAAGCATGGAAAATGACCAGCACCATCATATACATGGATTTATGAACTCTCTTGCAAATGGAAACAATTCCATATATGGTAATATGAAAGGGAATGAGAGCAACCTTAGCCAGTTTCACAATGTGGAAGAGCCTAATAAGTTATCACAAAACCTTGGTGTTTGCTTTGGTGGATCTGATAAATTGACATTAGACTTTTTGGGTGTTGGGGGAATGGTAAGAAACATGAGTGGTAGGTTTTCACAAAGAGAGCAACAACATTCTTTGGATTCAATGAGTTCTTTGGATCCAAAAATGGAAAACCAATCTTTTGGAAGCTCAGCACCGCAATAA 1701 0.4062 MEAASSSTPFLGIRQENQSQITQHQPSTAGASTADSTVSQKKKRNHPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALSHETARHPSNLNPLGTHLYGTTNHMSLTLSQVGAQISHLQNQNQETSNSILSLGNASLAAPKFEHMLSPLHHQQQSSYGVFQSPHSMPNNSSAGFFMNDPNQGFHQELQSHHQQGTISSHKQLYSLMQLPNLQGNTNNNNTTSAPTNMFNPSFFPNSNNSSGSIISDQFNNQGTTLYTNDSPSNHHFGSGSLSSLFGNSSLQQETMSPHMSATALLQKAAQMGSTTTNTNASTMLRGLGSSSNNGVESFGSDSREEGIRSSMENDQHHHIHGFMNSLANGNNSIYGNMKGNESNLSQFHNVEEPNKLSQNLGVCFGGSDKLTLDFLGVGGMVRNMSGRFSQREQQHSLDSMSSLDPKMENQSFGSSAPQ* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1150 566 Gene3D Classic Zinc Finger 52 118 - -
Lan11g1150 566 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Lan11g1150 566 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Lan11g1150 566 SMART c2h2final6 146 166 IPR013087 -
Lan11g1150 566 SMART c2h2final6 70 92 IPR013087 -
Lan11g1150 566 SMART c2h2final6 111 141 IPR013087 -
Lan11g1150 566 Gene3D Classic Zinc Finger 124 203 - -
Lan11g1150 566 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 542 - -
Lan11g1150 566 MobiDBLite consensus disorder prediction 536 566 - -
Lan11g1150 566 MobiDBLite consensus disorder prediction 1 38 - -
Lan11g1150 566 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 542 - -
Lan11g1150 566 MobiDBLite consensus disorder prediction 422 454 - -
Lan11g1150 566 SUPERFAMILY beta-beta-alpha zinc fingers 69 166 IPR036236 -
Lan11g1150 566 Pfam Zinc-finger double-stranded RNA-binding 70 92 IPR022755 -
Lan11g1150 566 MobiDBLite consensus disorder prediction 1 54 - -
Lan11g1150 566 MobiDBLite consensus disorder prediction 422 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1150 Lan-Chr11 15981526 15986572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1150 10 534 IDZ Gene Family AT2G02070 45.407 2.81e-129 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan11g1150 zf-C2H2_jaz 3.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1150 K25870 - gmx:100806198 676.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1150 11 15981526 15986572 Lan11g1150 11 15981526 15986572 ECH