Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1149 ATGAAACGCGACTTCTACGAAATCTCCGAAGACGAATGGGAAAACCACACCACCTCTTTCAAACCCTCTCGTGTTCTCAAAGCACCGCGACTTTCTTCTTCTTCCTCCTCCTCCTCTTCGCGGCTTCCACCGCCACCAATCGAGTCCTTCGCTTTTGGTTCCAATAACAAGCCTGAGGTTTCCGATCACGGCGACGACGATTGCGTTGAAATCGCGCCGAGTTCGACAATATTCCAGGAAAGCAACGGCAGCCTGGATGACCTGGAGGACGAAGACGTCGATGATTCCACTACCGCCCCTGCGCCGAACCGAGGCCGCCGGTTTATAATCGATGACGAAGATGATGATGTCAGCGATAGGGACGTTGCGGAAGTGTATGAGATAGAGTCCACTGAGGAGGAAGTGGAAGAGGTTGAGGATTTGAATGAAGGTGATGTGGTTGGTAAAGCTTTGCATAAGTGCTCGAAAATTTCCACGGAGCTGAGAAAGGAACTGTTTGGTTCTTCTGGTACCGCTTGTGAAAGGTACTCCGAGGTGGAGTCTTCTTCAGTGAAAATTGTGACTCAGGAGGATGTTGATGAAGCGTGTGGGTCTGAGGATTCGGATTTTCAGCCTCTGCTGAAGCCGTATCAGCTAGTTGGTGTCAATTTTTTGCTTCTTTTGCATCGGAAGGGTATTGGAGGAGCCATATTGGCAGATGAAATGGGTCTTGGCAAAACAGTTCAGGCCATCACATATTTAACTTTGTTGAAACATTTGCACAATGATCCTGGTCCTCATCTTATAGTATGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAGAAGTGGTGTCCAACTTTCTCCGTTCTTCAATATCATGGGGCTGGACGAGCAGCATATTGCAAGGAGTTGAACTCCCTGTCCAAGGCAGGATTGCCTCCTCCATTTAACGTCCTTCTTGTGTGTTATTCACTTTTTGAACGCCACAGTCCGCAGCAGAAAGATGATCGTAAAGTTCTGAAGCGTTGGAGGTGGAGCTGTGTGCTGATGGATGAGGCACATGCTTTGAAGGACAAAAATAGCTACAGGTGGAAAAATTTGATGTCCGTTGCACGAAACGCTAACCAGCGCTTGATGCTGACTGGGACACCTCTTCAGAATGACCTACATGAGTTATGGTCATTGTTGGAGTTTATGCTGCCTAATATTTTTGATAGTGAAGATGTTGACTTAAAAAAGTTACTAAATGCAGAAGATAGAGATTTAATTGGTCGTATGAAGTCCATCTTGGGGCCATTTATTTTGCGGCGTCTAAAATCTGATGTGATGCAGCAACTTGTTCAAAAAATACAGCAGGTTGAATATGTTGTTATGGAAAAGCAACAAGAACATGCTTATAAGGAAGCCATTGAGGATTATCGTGCTGTTTCACAAGCTCGGATTGCAAAGTGTTCCGACTTTAAGTCCAAAAATGTTCTTGAAGTCCTTCCTAAACGGCAGATAAATAATTATTTTGTTCAGTTCCGCAAGATTGCGAACCACCCCTTGTTGATAAGGCGGATCTATAATGACGAGGATGTCATTCGCTTTGCAAGAAAGCTACATCCAGTAGGTGCTTTTGGCTATGAATGTACGTTGGACAGGGTTATAGAGGAACTTAAAAGTTACAATGATTTCTCTATTCACCGGCTTCTACTTCACTATGGTGTCAAGGATAAAAAGGGGATTCTTTCAGATAAGCATGTGTTGCTTTCTGCAAAATGTCGGGCCCTAGCAAAACTTCTTCCTTCACTAAAGAAAGGTGGCCATCGTGTCTTGATCTTTAGTCAATGGACATCGATGCTTGACATATTGGAGTGGACTTTGGATGTCATTGGGTTTACATACAGACGGCTTGATGGAAGTACACAGGTAGCAGAGAGGCAAACAATAGTGGATACATTCAATAATGATACTTCCATATTTGCATGCTTGCTTTCCACTAGAGCTGGAGGTCAAGGCTTGAACTTAACCGGAGCTGATACTGTCGTAATTCATGATATGGATTTTAATCCACAGATTGATAGACAAGCAGAGGATCGTTGTCATCGAATTGGTCAAACAAAGCCTGTAACCATATATCGGCTGGTGACCAAGGGAACAGTCGATGAAAATGTATACGAGATTGCAAAGAGAAAGCTGGTATTGGATGCTGCTGTCCTTGAGTCCATGGATGTGGTTAATGAAGGTGACATGCCTGAGAAGACCATGGGAGAGATATTGTCTGCAATTTTGTTGAGTTAA 2271 0.4417 MKRDFYEISEDEWENHTTSFKPSRVLKAPRLSSSSSSSSSRLPPPPIESFAFGSNNKPEVSDHGDDDCVEIAPSSTIFQESNGSLDDLEDEDVDDSTTAPAPNRGRRFIIDDEDDDVSDRDVAEVYEIESTEEEVEEVEDLNEGDVVGKALHKCSKISTELRKELFGSSGTACERYSEVESSSVKIVTQEDVDEACGSEDSDFQPLLKPYQLVGVNFLLLLHRKGIGGAILADEMGLGKTVQAITYLTLLKHLHNDPGPHLIVCPASVLENWERELKKWCPTFSVLQYHGAGRAAYCKELNSLSKAGLPPPFNVLLVCYSLFERHSPQQKDDRKVLKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMLPNIFDSEDVDLKKLLNAEDRDLIGRMKSILGPFILRRLKSDVMQQLVQKIQQVEYVVMEKQQEHAYKEAIEDYRAVSQARIAKCSDFKSKNVLEVLPKRQINNYFVQFRKIANHPLLIRRIYNDEDVIRFARKLHPVGAFGYECTLDRVIEELKSYNDFSIHRLLLHYGVKDKKGILSDKHVLLSAKCRALAKLLPSLKKGGHRVLIFSQWTSMLDILEWTLDVIGFTYRRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESMDVVNEGDMPEKTMGEILSAILLS* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1149 756 Coils Coil 439 459 - -
Lan11g1149 756 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 220 398 IPR014001 -
Lan11g1149 756 MobiDBLite consensus disorder prediction 28 44 - -
Lan11g1149 756 Pfam Helicase conserved C-terminal domain 583 695 IPR001650 -
Lan11g1149 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 433 IPR027417 -
Lan11g1149 756 PANTHER SNF2/RAD54 HELICASE FAMILY 87 754 - -
Lan11g1149 756 CDD DEXHc_Snf 207 397 - -
Lan11g1149 756 Gene3D - 180 458 IPR038718 -
Lan11g1149 756 SMART helicmild6 612 695 IPR001650 -
Lan11g1149 756 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1 87 754 - -
Lan11g1149 756 MobiDBLite consensus disorder prediction 1 114 - -
Lan11g1149 756 MobiDBLite consensus disorder prediction 1 18 - -
Lan11g1149 756 Gene3D - 567 750 IPR027417 -
Lan11g1149 756 SMART ultradead3 203 408 IPR014001 -
Lan11g1149 756 Pfam SNF2-related domain 226 513 IPR000330 GO:0005524|GO:0140658
Lan11g1149 756 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 586 736 IPR001650 -
Lan11g1149 756 CDD SF2_C_SNF 573 706 - -
Lan11g1149 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 339 737 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1149 Lan-Chr11 15935808 15953901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1149 205 722 RAD5 or RAD16-like Gene Family AT1G02670 26.895 1.78e-37 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan11g1149 SNF2_N 8.8e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1149 K14439 - gmx:100806323 1232.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1149 11 15935808 15953901 Lan11g1149 11 15935808 15953901 ECH