Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1145 ATGACTTCCTCCTTTGACCAGCCAAATAATATGCATCACAACACCAATGCAGTACTTTTCTTTAAGATTATTGTTACAACAACTCTCAATGTTGGAAAGCTAAAAACCCCAAACAAATTTTCAAAGAAATATGGTGCTGGTCTATCAAACCCAGTGTTTCTCAAACCACCAGATGGTACTGAATGGAAAGTATATTGGACTAAACATGATGGTGAGATTTGGTTTGAGATGGGTTGGAAAGAATTTGCGAAATACTACTCTCTTGATCATGGGCATATGGTGATGTTTGAATATAATAGAAGTTCTCAATTTGTTGTGCACATCTTTGACAAGAGTGCAACTGAGATAGACTATACGTTCGATGTTACTCGTGGTCAAAAGGACAACCTTAATCAGATCGGTGAAGACGCTGTTGAAATTTTGGATGCGAAATCTCCATGTGAGAAGACTAGACTCAAATCAACAATGTCATGTCCTCAACCCTGTAAGACAATGAGAACAAGCAGAATTAGAGATGTCGGAGGAAGCTCCAATCCGAAAAACTTGCATGAGGACATGGTTGAAGGTAATTTTAACACTGAATGCTCAAAAGCAGAACAATTAACTTCGGAAACTACTGAGACTTCAATCACAGCCACAACTTTCAGATCTAAATACCCACATTTCATTCTTGTCATGAAGACTTCCCATGTCAATGGATACTCCTTGAGAATACCAACAGAATTTGCCGAAAAATATTTAAAGAAAACAAAAGGGGTTGCCCACCTTCAGGTCATGGATGAGAGAACTTGGTCTGTTGTTTATATTGCTCCCTCAATTACTACTGGATGGAATAAATTTGCGTCAGATAATAATCTGAGTATTGGAAATGTGTGTGTTTTTGAGCTGATCACGAGGAAAGAAAGGCTTTCTTTCAAGGTATTTATATTTCCAGTTGCAGAAGAACCAAATTGCCCTCGTTCAAAAGGTAGGAATGGAAACCAAAGTGTTATAATACCACTGTTGATCAGTCCTTGCCTGGGAATGATCAGACCTATGAAAGAAGCTAAGAAGTTTAATTCAGAGAATCCCATTTTCATAGTCAAATTAAAGCAAAGTTTAATGTCGAGACACGGACCGAATGTACCATTACTATTTGTCCGAAAGTATTTCGAAAAAAGGAAGCAGACTGTGATTATACAGTTCGGAAAGAAACTGTGGCCTGTAAGCTTTCTCCACTATGAATACAAAAGTTCAGGCCAGTTATCTTCTGGTTGGTCTCTATTTGCAGAAGAAAGTAAATTGCAAGCTGGAGATGTTTGTATCTTTGAGCTCATCTATAGAGAAATTGCAGTGCTTGGTGTTCATGTTTTCAGAGGCCATGGTTAG 1368 0.3808 MTSSFDQPNNMHHNTNAVLFFKIIVTTTLNVGKLKTPNKFSKKYGAGLSNPVFLKPPDGTEWKVYWTKHDGEIWFEMGWKEFAKYYSLDHGHMVMFEYNRSSQFVVHIFDKSATEIDYTFDVTRGQKDNLNQIGEDAVEILDAKSPCEKTRLKSTMSCPQPCKTMRTSRIRDVGGSSNPKNLHEDMVEGNFNTECSKAEQLTSETTETSITATTFRSKYPHFILVMKTSHVNGYSLRIPTEFAEKYLKKTKGVAHLQVMDERTWSVVYIAPSITTGWNKFASDNNLSIGNVCVFELITRKERLSFKVFIFPVAEEPNCPRSKGRNGNQSVIIPLLISPCLGMIRPMKEAKKFNSENPIFIVKLKQSLMSRHGPNVPLLFVRKYFEKRKQTVIIQFGKKLWPVSFLHYEYKSSGQLSSGWSLFAEESKLQAGDVCIFELIYREIAVLGVHVFRGHG* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1145 455 SMART B3_2 20 112 IPR003340 GO:0003677
Lan11g1145 455 SMART B3_2 359 454 IPR003340 GO:0003677
Lan11g1145 455 SMART B3_2 222 311 IPR003340 GO:0003677
Lan11g1145 455 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 346 452 - -
Lan11g1145 455 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 12 310 - -
Lan11g1145 455 CDD B3_DNA 220 308 IPR003340 GO:0003677
Lan11g1145 455 PANTHER B3 DOMAIN-CONTAINING 12 310 - -
Lan11g1145 455 PANTHER B3 DOMAIN-CONTAINING 346 452 - -
Lan11g1145 455 SUPERFAMILY DNA-binding pseudobarrel domain 352 452 IPR015300 -
Lan11g1145 455 CDD B3_DNA 357 452 IPR003340 GO:0003677
Lan11g1145 455 Pfam B3 DNA binding domain 222 308 IPR003340 GO:0003677
Lan11g1145 455 Pfam B3 DNA binding domain 23 111 IPR003340 GO:0003677
Lan11g1145 455 Pfam B3 DNA binding domain 361 452 IPR003340 GO:0003677
Lan11g1145 455 Gene3D - 201 314 IPR015300 -
Lan11g1145 455 Gene3D - 342 454 IPR015300 -
Lan11g1145 455 ProSiteProfiles B3 DNA-binding domain profile. 19 112 IPR003340 GO:0003677
Lan11g1145 455 SUPERFAMILY DNA-binding pseudobarrel domain 14 112 IPR015300 -
Lan11g1145 455 ProSiteProfiles B3 DNA-binding domain profile. 221 313 IPR003340 GO:0003677
Lan11g1145 455 CDD B3_DNA 19 110 IPR003340 GO:0003677
Lan11g1145 455 Gene3D - 12 113 IPR015300 -
Lan11g1145 455 ProSiteProfiles B3 DNA-binding domain profile. 358 454 IPR003340 GO:0003677
Lan11g1145 455 SUPERFAMILY DNA-binding pseudobarrel domain 216 311 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1145 Lan-Chr11 15849882 15853145 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1145 344 452 B3 DNA Binding Superfamily AT3G18990 36.937 7.69e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan11g1145 B3 4.9e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1145 - - lang:109359275 911.753