Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1142 ATGACTTCTCAAAGAGTTGACCAGAACATCCACTTTTTCAAGGTTATTCTTGAAAGTAACCTTCGCAATGGAGACCTGAGGGTCCCCAAAAGTTTTGTGAAGAAATATTGGAAAGGAATGAGAAACCCAGTTTCTCTAATGCTTCCAAACCTCACTGAATGGAAAGTTTATTGGATCAAACGTGATGGTGATGTTTGGTTTCTAAATGGTTGGAAAGAATTTGCAGAATACTTGTCTTTGGATGCAGCACAGTTTCTAATGTTTCAGTATGAAGAAAAATCTCAGTTTAAAGTTATAGTGTTTGGTAAAAGTGCCTTAGAAATAAAGTACCCTTCATCTATAGGTAATGATAAAAAAGTTGAAGAGGTTGATGAGAGTGATTGTTCTTTGGAAATTGTTGTTGATGGTAAAAGGCAAAAGTATTCATCCACTTCTCAATCTTGTAAGAAGATAAAAACAAGCATTAAGGAAGAGCCGGAATGCTATGCTGAAATGAAGAATGATGTGAAGAAAGCCCCGTCAGGTTTTGATATTGATGATATGAGCAAAGCTCTACTTGATAAAGTGAAGAATACTTTCAGATCTGAGAATCACTTTTTCTTATGTAAATGTCAGAGAACATACACTGAGAAAGATCTTCTGAACATACCAAAAGATTTTTTGGAACATCTGCGCAACAAGGGTGGAAATGCTACTCTTTCGGTTAAGGAGAGAAGTTGGGATGTCAGGATAAAGTTTTCTTCCTATAAACAAGCATTGCTTTGTGAAGGTTGGAGGACATTTTCCCAGGACAATAATTTGAAATTGGGTGATGTTTGTGCTTTTGTGCTAGACAAGCGTGAAGGAATTTCTTTCCAAGTTGTTATTTTTAGGCTACGAGAACATCACAGTACTCTCTTTGCTGAAGACTATAGACTTGGTCAGGAGTTGCAACCTTGA 939 0.3663 MTSQRVDQNIHFFKVILESNLRNGDLRVPKSFVKKYWKGMRNPVSLMLPNLTEWKVYWIKRDGDVWFLNGWKEFAEYLSLDAAQFLMFQYEEKSQFKVIVFGKSALEIKYPSSIGNDKKVEEVDESDCSLEIVVDGKRQKYSSTSQSCKKIKTSIKEEPECYAEMKNDVKKAPSGFDIDDMSKALLDKVKNTFRSENHFFLCKCQRTYTEKDLLNIPKDFLEHLRNKGGNATLSVKERSWDVRIKFSSYKQALLCEGWRTFSQDNNLKLGDVCAFVLDKREGISFQVVIFRLREHHSTLFAEDYRLGQELQP* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1142 312 Gene3D - 180 295 IPR015300 -
Lan11g1142 312 ProSiteProfiles B3 DNA-binding domain profile. 11 104 IPR003340 GO:0003677
Lan11g1142 312 SUPERFAMILY DNA-binding pseudobarrel domain 194 291 IPR015300 -
Lan11g1142 312 PANTHER B3 DOMAIN-CONTAINING 6 292 - -
Lan11g1142 312 CDD B3_DNA 214 291 IPR003340 GO:0003677
Lan11g1142 312 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 6 292 - -
Lan11g1142 312 ProSiteProfiles B3 DNA-binding domain profile. 199 293 IPR003340 GO:0003677
Lan11g1142 312 SMART B3_2 12 104 IPR003340 GO:0003677
Lan11g1142 312 SMART B3_2 199 293 IPR003340 GO:0003677
Lan11g1142 312 CDD B3_DNA 11 101 IPR003340 GO:0003677
Lan11g1142 312 Pfam B3 DNA binding domain 12 100 IPR003340 GO:0003677
Lan11g1142 312 Pfam B3 DNA binding domain 202 291 IPR003340 GO:0003677
Lan11g1142 312 Gene3D - 4 105 IPR015300 -
Lan11g1142 312 SUPERFAMILY DNA-binding pseudobarrel domain 7 111 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1142 Lan-Chr11 15749529 15752423 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1142 12 294 B3 DNA Binding Superfamily AT3G18990 25.075 1.50e-23 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan11g1142 B3 1.1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1142 - - lang:109359551 640.188