Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1141 ATGGATAAAGCGAGAGATTGTATAAATAAAACTAAGAAGCCTGCGTTTATTCAACTATTGTTCCCAGCTTATGTGAATCCCAAGAGAGATGTTTTGGGGATAAATAGTGTTTTTGCAAAAGAATACCTAAAAGGGTTCGAAGGGAAAGCAACAATTGGGGTTCTTCATGAGAAAAAGACATGGCCTGTTAGGATCAATATCAATCATTGCACTGGCCAAACTTCCATGACTGGTGGTTGGAAATCATTTTGGCAGCATTACAAGTTACAAGTTAATGATGTTTGTGTCTTTGAGATGACTCAACACACACCACTTTCATTCAAAGTTATTATCTTTCCAGCCAGAGAAGTACATAAGGAGTTGCAAGGTTATGGGAATGAAGCACACCAACATCCACCACAGAGAGAGAAAAAAATCAAGATTTACATAGGAAACAATCATCTGAGGAGTACTCCAAACATACCAATAGATTTTTTGAAGAGATATCCTAAATGTGATGGAAAAGATGTGAAGTTGCAAGTTGGAGAAGAATGGTGGGTAGTAAAATTGATATACTATCCACATTATTGTTTTGGTAGATTCTCTAGAGGTTGGTATGCATTTGTGAGAGAATGCAAATTGGAAGTTGAAAACAATTGGGAATTTGACATGATTGATGAAGAAAATTTAGTGTTCAAAGTTTCAATTTCAAATTAA 696 0.3549 MDKARDCINKTKKPAFIQLLFPAYVNPKRDVLGINSVFAKEYLKGFEGKATIGVLHEKKTWPVRININHCTGQTSMTGGWKSFWQHYKLQVNDVCVFEMTQHTPLSFKVIIFPAREVHKELQGYGNEAHQHPPQREKKIKIYIGNNHLRSTPNIPIDFLKRYPKCDGKDVKLQVGEEWWVVKLIYYPHYCFGRFSRGWYAFVRECKLEVENNWEFDMIDEENLVFKVSISN* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1141 231 Gene3D - 126 231 IPR015300 -
Lan11g1141 231 Gene3D - 1 117 IPR015300 -
Lan11g1141 231 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 9 114 - -
Lan11g1141 231 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 148 230 - -
Lan11g1141 231 Pfam B3 DNA binding domain 17 113 IPR003340 GO:0003677
Lan11g1141 231 SUPERFAMILY DNA-binding pseudobarrel domain 151 227 IPR015300 -
Lan11g1141 231 ProSiteProfiles B3 DNA-binding domain profile. 59 115 IPR003340 GO:0003677
Lan11g1141 231 CDD B3_DNA 14 113 IPR003340 GO:0003677
Lan11g1141 231 SUPERFAMILY DNA-binding pseudobarrel domain 10 113 IPR015300 -
Lan11g1141 231 PANTHER B3 DOMAIN-CONTAINING 148 230 - -
Lan11g1141 231 PANTHER B3 DOMAIN-CONTAINING 9 114 - -
Lan11g1141 231 SMART B3_2 16 115 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1141 Lan-Chr11 15722121 15723812 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1141 14 112 B3 DNA Binding Superfamily AT3G18990 33.333 9.44e-07 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan11g1141 B3 7.4e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1141 - - lang:109360180 497.278