Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1130 ATGGCTTCACCCAATTACGGCGTTCGTGAACAGGATCAGTACATGCCAATCGCCAACGTGATAAGGATCATGCGACGAATTCTTCCCACACATGCAAAAATCTCAGACGATGCAAAAGAAACAATCCAAGAATGTGTCTCTGAGTACATTAGTTTCATCACTGCTGAAGCAAACGACCGGTGCCAACGTGAGCAAAGGAAAACAGTGACAGCAGAAGATGTTCTATTTGCAATGGGTAAGCTTGGTTTCGATGATTACGTTGGTCCTCTTTCTCTTTACCTTCAACGTTATCGTGAGAGTGAAGGTGAACCTGCTGCTGTTAGAAGAGTTGCTAATTATGGCTCTCATCATCATTCTCTTCAACCACCACCGCCACCACCGCAGCAACAACCACTTGGTGGTGGTGGTGGTGGTGTGTCATATGGATCTGGTTTTCTTCCTTCTCCGGTTGTTGGAATGTTCGATCCTTCAACAGCAGGTATGTTTTATAGGGATGATGGGTCTGCTGGATCTGGGAATAATAGCATTGCTGCTTTTGATCCTTTTGCTCATATCAAACGTGATCGTATGTGA 573 0.4503 MASPNYGVREQDQYMPIANVIRIMRRILPTHAKISDDAKETIQECVSEYISFITAEANDRCQREQRKTVTAEDVLFAMGKLGFDDYVGPLSLYLQRYRESEGEPAAVRRVANYGSHHHSLQPPPPPPQQQPLGGGGGGVSYGSGFLPSPVVGMFDPSTAGMFYRDDGSAGSGNNSIAAFDPFAHIKRDRM* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1130 190 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 15 78 IPR003958 -
Lan11g1130 190 PRINTS CCAAT-binding transcription factor subunit A signature 42 60 - -
Lan11g1130 190 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Lan11g1130 190 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Lan11g1130 190 Gene3D Histone, subunit A 4 121 IPR009072 GO:0046982
Lan11g1130 190 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 7 114 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lan11g1130 190 MobiDBLite consensus disorder prediction 113 139 - -
Lan11g1130 190 SUPERFAMILY Histone-fold 11 105 IPR009072 GO:0046982
Lan11g1130 190 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 7 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1130 Lan-Chr11 15418868 15420470 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1130 8 103 CCAAT-HAP3 Transcription Factor Family AT5G47670 85.417 2.33e-57 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lan11g1130 CBFD_NFYB_HMF 7.4e-24 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1130 K08065 - gmx:547959 214.157