Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1109 ATGATGGAGAATTCAATCGGAAAACCAATTCCCAGTATTGATGCTGCAATTCCTTCTTCACAGTCTCCTAAACAAGAGGGCAAGAGGGAGGGTGATGATGATCTGGAGAAGCTAGTGTATTCAAAGAAGCAGAAGAGAGATGAGGTTGCTGAGAACCAAAAGAACATGAGCGAAATTAGGTCAGATGATTTCTCATCATATCCTGAACAAGATCAGGATCAGAAGTCTGCTAAAAATGGTACACCGGAGAATGAAGACACTCCAGCTACCATTTCCAATTCTTCAGAATACTCAGGCGGTGATTCTGATGAGGATAAAGCGGTAATGGATATTGATCTGGGTGATAATTCTGAAGAAAGTGATGTAGAGACACAGAAGAAAAAGATGAAAACCTTGCCTGTGAAAGGTTCTGAGAACTTGGATGAAAATGATGAAGAAATTGAGGAAAAATCCTTCAGAATTCTTGAGGAAAGACCTAGAACTCCAGCTACACTAAAAGTACAAAATGTGACATCAAAAAGAATATGTGTTAGAAACTTGTCATATAGTGTGGAACGGGATGATATGGAAAACCTGTTCAAGGAGTGTGGAGAAGTTGTTGATGTCCGTTTCATTACAGACAGTGAGGGGAGGTTTAGAGGCTTTGGGTATATTTCGTTTGCAACAGAAGAAGCAGCTCTGAAAGCCCTTGAGTTGGATAATACAGAACTGTTGAGATGTCCCATTAAAATTGTTATAGCTCGGGAAAGGGGTAAATATATTCACCGTAGCAGTAATTTTAGCAACTTTGGCGAAACATTCCAGTCGGGTGCAAGTGTTCGGTTGAAAACAGTATTTGTTGCAGGTTTTAATAAATCTCTCACTGAAGAGAAGATAAAAACTAGCTTGGAAGAGCATTTCAGTTCTTGTGGAGAGATTACAAGGATATCAATTCCAAAATATCCTGATTCTGTGTCTGTCAAGGGGTATGCTCACTTGGACTTCAAGGATTTTGATAGCTGCAAGAAGGCTCTACAACTCAATAAAACTGAGATTGGAGGTTATTACTTATCAGTTGAAAAAGCAATGCCTCGACGTCAATATGATGGGAGGGATGGAGGTGGCCATCAACATGGTTGGAGGGATGGAGGTGATCGTCAATACGGTGAGAGGGACGGAGGTGGCCGTCAATACGGTGGGAGGAGGGATGGAGGTGGCCATCAATTTTGTGGGAGGGATGGAGGTGGCTATCGACATAGTGGGAGGGGTGGAGGTTGTCTTCAATATGGTTGGAGAGGGTATGGAGTTGACCATCAATATGGTGGGAGAGGTGGAGGTGGCTATCTACACGGTGGGAGGGATGGAGATGGTCTTCGATATGGCGGGAGGTGGGATGGAGGTGGCCATCAATATAGTGGGAGTGATGTCGGTGGCCATCAATATGGTGGGCTTGATGGAGGTGGTCATCCATATGGTGGGCGTGATGGAGGTGGTCGTCAGTATGGTGGGAGGGATATCAGCGGCCAACAATATGGTGGGAGGGATATCAGGGGCCAACAATATGGTGGAAGGGATATTGGTGGCCATCAATATGGGGGGCGCGATATCGGTGGCCGTCAATATGGTGGGAGGGATGGAGGTGGCCCTCAATATGGGGGGCGCGGCAGAGGTGGCCCTCAATATGGGGGGCATGACGGAGGTGGTCATCAATATGGTGGGAGGGGGGGTGGAAGTGGGCATGGGTATGGTGGGAGGGGTGGAGGTGGCCGAGGCATGCAGAGTTGGGGGAGAAGTGGTGACAGTTGGAGGCATTGA 1794 0.4649 MMENSIGKPIPSIDAAIPSSQSPKQEGKREGDDDLEKLVYSKKQKRDEVAENQKNMSEIRSDDFSSYPEQDQDQKSAKNGTPENEDTPATISNSSEYSGGDSDEDKAVMDIDLGDNSEESDVETQKKKMKTLPVKGSENLDENDEEIEEKSFRILEERPRTPATLKVQNVTSKRICVRNLSYSVERDDMENLFKECGEVVDVRFITDSEGRFRGFGYISFATEEAALKALELDNTELLRCPIKIVIARERGKYIHRSSNFSNFGETFQSGASVRLKTVFVAGFNKSLTEEKIKTSLEEHFSSCGEITRISIPKYPDSVSVKGYAHLDFKDFDSCKKALQLNKTEIGGYYLSVEKAMPRRQYDGRDGGGHQHGWRDGGDRQYGERDGGGRQYGGRRDGGGHQFCGRDGGGYRHSGRGGGCLQYGWRGYGVDHQYGGRGGGGYLHGGRDGDGLRYGGRWDGGGHQYSGSDVGGHQYGGLDGGGHPYGGRDGGGRQYGGRDISGQQYGGRDIRGQQYGGRDIGGHQYGGRDIGGRQYGGRDGGGPQYGGRGRGGPQYGGHDGGGHQYGGRGGGSGHGYGGRGGGGRGMQSWGRSGDSWRH* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1109 597 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 280 412 - -
Lan11g1109 597 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 85 268 - -
Lan11g1109 597 MobiDBLite consensus disorder prediction 360 400 - -
Lan11g1109 597 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 357 IPR000504 GO:0003723
Lan11g1109 597 SMART rrm1_1 174 245 IPR000504 GO:0003723
Lan11g1109 597 SMART rrm1_1 277 353 IPR000504 GO:0003723
Lan11g1109 597 MobiDBLite consensus disorder prediction 479 597 - -
Lan11g1109 597 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 85 268 - -
Lan11g1109 597 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 280 412 - -
Lan11g1109 597 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 350 IPR000504 GO:0003723
Lan11g1109 597 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 175 243 IPR000504 GO:0003723
Lan11g1109 597 Gene3D - 265 391 IPR012677 -
Lan11g1109 597 SUPERFAMILY RNA-binding domain, RBD 164 263 IPR035979 GO:0003676
Lan11g1109 597 MobiDBLite consensus disorder prediction 25 69 - -
Lan11g1109 597 MobiDBLite consensus disorder prediction 1 146 - -
Lan11g1109 597 Gene3D - 101 259 IPR012677 -
Lan11g1109 597 MobiDBLite consensus disorder prediction 70 98 - -
Lan11g1109 597 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 173 249 IPR000504 GO:0003723
Lan11g1109 597 Coils Coil 42 62 - -
Lan11g1109 597 MobiDBLite consensus disorder prediction 99 146 - -
Lan11g1109 597 SUPERFAMILY RNA-binding domain, RBD 273 368 IPR035979 GO:0003676
Lan11g1109 597 MobiDBLite consensus disorder prediction 360 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1109 Lan-Chr11 14506501 14519277 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1109 175 339 Eukaryotic Initiation Factors Gene Family AT4G34110 26.061 2.11e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1109 K11294 - lang:109360902 657.521