Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1085 ATGGATGAAATGAATTGTAGCTCTGAGTGGAGCTGGGAGCAGGATAAAGCATTTGAAAGTGCCTTGGTGACTCATCCAGAGGATGCTCCAGATCGATGGGAGAAGATTGCGGCTAATGTACCAGGGAAAACTGTAGAAGAAATTAAACAGCATTATGAGCTCTTGGTTGAAGATATTAACCAGATCGAATCTGGTTGTGTGCCTCTACCCTCTTATAATTCTTCGCCAGAGGGCTCAGCAAGCCATGCTAGTGATGAAGGAGCTGGCAAGAAGAGTGGCCATCATAATAGTGATTCTAATCATGGAACTAAGGCATCGAGATCGGATCAGGAACGGCGAAAGGGTATTGCTTGGACAGAGGAAGAACACAGGTTATTTCTTCTCGGCTTAGAGAAGTATGGAAAAGGTGACTGGAGAAGTATATCAAGGAACTTTGTGGTGACAAGAACCCCTACGCAAGTAGCAAGCCATGCTCAAAAATACTTCATTCGTTTGAACTCGATGAATAAAGATAGAAGGCGATCCAGCATACACGATATTACCAGTGTTAATAATGGAGATGTTTCAGCATCTCAAGCACCAATTACTGGCCAAACCAATGGTTCTGCAGGTAATTCTACCGGAAAATCAGGCAAACAAGCACCTCCAGCCTCAACTGGGGTACCAAGCGTCGGAATATATGCTGCTCCTACCATTGGACAACCTATAGGAGGACCCCTCGTATCGGCTGTTGGAACCCCAGTTAATCTTCCCGCCCCTGGACACATGGCATATGGTGTCCGAGCCCCTGTTCCTGGTGCGCCGATGAACATTGTTCCTATGACATACCCTATGTCACAGACATCTGCTCCTCATAGGTGA 861 0.4623 MDEMNCSSEWSWEQDKAFESALVTHPEDAPDRWEKIAANVPGKTVEEIKQHYELLVEDINQIESGCVPLPSYNSSPEGSASHASDEGAGKKSGHHNSDSNHGTKASRSDQERRKGIAWTEEEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDVSASQAPITGQTNGSAGNSTGKSGKQAPPASTGVPSVGIYAAPTIGQPIGGPLVSAVGTPVNLPAPGHMAYGVRAPVPGAPMNIVPMTYPMSQTSAPHR* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1085 286 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 114 164 IPR006447 GO:0003677
Lan11g1085 286 SMART sant 114 164 IPR001005 -
Lan11g1085 286 SMART sant 6 58 IPR001005 -
Lan11g1085 286 MobiDBLite consensus disorder prediction 179 217 - -
Lan11g1085 286 Gene3D - 4 69 - -
Lan11g1085 286 SUPERFAMILY Homeodomain-like 112 167 IPR009057 -
Lan11g1085 286 CDD SANT 9 56 IPR001005 -
Lan11g1085 286 SUPERFAMILY Homeodomain-like 8 64 IPR009057 -
Lan11g1085 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 109 166 IPR017930 -
Lan11g1085 286 PANTHER TRANSCRIPTION FACTOR KUA1 5 274 - -
Lan11g1085 286 MobiDBLite consensus disorder prediction 67 81 - -
Lan11g1085 286 MobiDBLite consensus disorder prediction 172 219 - -
Lan11g1085 286 ProSiteProfiles SANT domain profile. 118 166 IPR017884 -
Lan11g1085 286 PANTHER HOMEODOMAIN-LIKE TRANSCRIPTIONAL REGULATOR-RELATED 5 274 - -
Lan11g1085 286 CDD SANT 117 162 IPR001005 -
Lan11g1085 286 MobiDBLite consensus disorder prediction 67 114 - -
Lan11g1085 286 ProSiteProfiles SANT domain profile. 7 60 IPR017884 -
Lan11g1085 286 Pfam Myb-like DNA-binding domain 8 52 IPR001005 -
Lan11g1085 286 Pfam Myb-like DNA-binding domain 117 162 IPR001005 -
Lan11g1085 286 ProSiteProfiles Myb-like domain profile. 110 162 IPR001005 -
Lan11g1085 286 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
Lan11g1085 286 MobiDBLite consensus disorder prediction 87 114 - -
Lan11g1085 286 Gene3D - 116 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1085 Lan-Chr11 13965049 13972721 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan11g1085 Myb_DNA-binding 5.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1085 - - ccaj:109792793 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1085 11 13965049 13972721 Lan2g0130 2 1108297 1114882 LSH
Lan11g1085 11 13965049 13972721 Lan9g0724 9 11302162 11310593 LSH